RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 LAMTOR1Q6IAA8 161 aa11.97□□□□□ -0.49
USP39-205ENST00000442708 PATE2Q6UY27 113 aa11.97□□□□□ -0.49
USP39-205ENST00000442708 OR1B1Q8NGR6 318 aa11.97□□□□□ -0.49
USP39-205ENST00000442708 OR2T35Q8NGX2 323 aa11.97□□□□□ -0.49
USP39-205ENST00000442708 SMIM3Q9BZL3 60 aa11.97□□□□□ -0.49
USP39-205ENST00000442708 WFDC1Q9HC57 220 aa11.97□□□□□ -0.49
USP39-205ENST00000442708 COL7A1Q02388 2944 aa11.97□□□□□ -0.49
USP39-205ENST00000442708 FGF7P21781 194 aa11.96□□□□□ -0.49
USP39-205ENST00000442708 BMI1P35226 326 aa11.96□□□□□ -0.49
USP39-205ENST00000442708 CAMLGP49069 296 aa11.96□□□□□ -0.49
USP39-205ENST00000442708 MIC13Q5XKP0 118 aa11.96□□□□□ -0.49
USP39-205ENST00000442708 ZNF546Q86UE3 836 aa11.96□□□□□ -0.49
USP39-205ENST00000442708 GTSCR1Q86UQ5 136 aa11.96□□□□□ -0.49
USP39-205ENST00000442708 NARS2Q96I59 477 aaKnown RBP11.96□□□□□ -0.49
USP39-205ENST00000442708 MS4A6AQ9H2W1 248 aa11.96□□□□□ -0.49
USP39-205ENST00000442708 TMEM231Q9H6L2 316 aa11.96□□□□□ -0.49
USP39-205ENST00000442708 IGHV4-30-4P0DP06 118 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 RPL11P62913 178 aaKnown RBP11.95□□□□□ -0.5
USP39-205ENST00000442708 PRR20EP86478 221 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 PRR20CP86479 221 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 PRR20DP86480 221 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 PRR20BP86481 221 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 PRR20AP86496 221 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 FGL1Q08830 312 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 LEMD1Q68G75 181 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 WFDC3Q8IUB2 231 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 FAM24BQ8N5W8 94 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 DEFB125Q8N687 156 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 GRAMD2BQ96HH9 432 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 UHRF2Q96PU4 802 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 ATP5SQ99766 215 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 ARL6Q9H0F7 186 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 UBQLN2Q9UHD9 624 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 SMAD5-AS1Q9Y6J3 95 aa11.95□□□□□ -0.5
USP39-205ENST00000442708 ZNF98A6NK75 572 aa11.94□□□□□ -0.5
USP39-205ENST00000442708 H3BRN7 92 aa11.94□□□□□ -0.5
USP39-205ENST00000442708 HYPMO75409 117 aa11.94□□□□□ -0.5
USP39-205ENST00000442708 OPCMLQ14982 345 aa11.94□□□□□ -0.5
USP39-205ENST00000442708 ODF3L2Q3SX64 289 aa11.94□□□□□ -0.5
USP39-205ENST00000442708 AQP10Q96PS8 301 aa11.94□□□□□ -0.5
USP39-205ENST00000442708 CITED4Q96RK1 184 aa11.94□□□□□ -0.5
USP39-205ENST00000442708 SCRT1Q9BWW7 348 aa11.94□□□□□ -0.5
USP39-205ENST00000442708 NPCDR1Q9BY65 106 aa11.94□□□□□ -0.5
USP39-205ENST00000442708 FXYD6-FXYD2A0A087WZ82 144 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 RNF222A6NCQ9 220 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 OR4C46A6NHA9 309 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 OR11H12B2RN74 326 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 K7EQG2 157 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 CD5P06127 495 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 OR5G3P0C626 314 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 RPL29P47914 159 aaKnown RBP11.93□□□□□ -0.5
USP39-205ENST00000442708 RAB31Q13636 194 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 C1orf194Q5T5A4 169 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 MORN5Q5VZ52 161 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 SIGLEC15Q6ZMC9 328 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 STXBP6Q8NFX7 210 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 DCANP1Q8TF63 244 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 TMEM37Q8WXS4 190 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 PPP1R14BQ96C90 147 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 C17orf77Q96MU5 243 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 SHANK2-AS3Q9BTD1 123 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 SLC25A39Q9BZJ4 359 aaPredicted RBP11.93□□□□□ -0.5
USP39-205ENST00000442708 WDR61Q9GZS3 305 aaKnown RBP11.93□□□□□ -0.5
USP39-205ENST00000442708 SLC25A32Q9H2D1 315 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 TNFSF18Q9UNG2 199 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 HIGD1AQ9Y241 93 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 RFNGQ9Y644 331 aa11.93□□□□□ -0.5
USP39-205ENST00000442708 MPDU1O75352 247 aa11.92□□□□□ -0.5
USP39-205ENST00000442708 FRMD6-AS1P0C7T7 363 aa11.92□□□□□ -0.5
USP39-205ENST00000442708 NUP62P37198 522 aaPredicted RBP11.92□□□□□ -0.5
USP39-205ENST00000442708 ZNF124Q15973 351 aa11.92□□□□□ -0.5
USP39-205ENST00000442708 ARV1Q9H2C2 271 aa11.92□□□□□ -0.5
USP39-205ENST00000442708 SLC25A22Q9H936 323 aa11.92□□□□□ -0.5
USP39-205ENST00000442708 SLC39A9Q9NUM3 307 aa11.92□□□□□ -0.5
USP39-205ENST00000442708 FBXL17Q9UF56 701 aa11.92□□□□□ -0.5
USP39-205ENST00000442708 PXMP4Q9Y6I8 212 aa11.92□□□□□ -0.5
USP39-205ENST00000442708 hCG_2014768A0A024R1R8 64 aa11.91□□□□□ -0.5
USP39-205ENST00000442708 TRAV2A0A0B4J234 112 aa11.91□□□□□ -0.5
USP39-205ENST00000442708 HELTA6NFD8 242 aa11.91□□□□□ -0.5
USP39-205ENST00000442708 A8MZ25 164 aa11.91□□□□□ -0.5
USP39-205ENST00000442708 DNASE2O00115 360 aaPredicted RBP11.91□□□□□ -0.5
USP39-205ENST00000442708 B2MP61769 119 aa11.91□□□□□ -0.5
USP39-205ENST00000442708 PAFAH1B2P68402 229 aa11.91□□□□□ -0.5
USP39-205ENST00000442708 PXDC1Q5TGL8 231 aa11.91□□□□□ -0.5
USP39-205ENST00000442708 OR8I2Q8N0Y5 310 aa11.91□□□□□ -0.5
USP39-205ENST00000442708 RSG1Q9BU20 258 aa11.91□□□□□ -0.5
USP39-205ENST00000442708 PFDN2Q9UHV9 154 aa11.91□□□□□ -0.5
USP39-205ENST00000442708 RBMY1BA6NDE4 496 aaKnown RBP11.9□□□□□ -0.5
USP39-205ENST00000442708 RBMY1EA6NEQ0 496 aaKnown RBP11.9□□□□□ -0.5
USP39-205ENST00000442708 RBMY1DP0C7P1 496 aaKnown RBP11.9□□□□□ -0.5
USP39-205ENST00000442708 GCSAMLQ5JQS6 135 aa11.9□□□□□ -0.5
USP39-205ENST00000442708 LINC00322Q6ZN03 302 aaPredicted RBP11.9□□□□□ -0.5
USP39-205ENST00000442708 APRG1Q8IVJ8 170 aa11.9□□□□□ -0.5
USP39-205ENST00000442708 OR11H4Q8NGC9 324 aa11.9□□□□□ -0.5
USP39-205ENST00000442708 ST6GAL2Q96JF0 529 aa11.9□□□□□ -0.5
USP39-205ENST00000442708 B9D2Q9BPU9 175 aa11.9□□□□□ -0.5
USP39-205ENST00000442708 SRD5A3Q9H8P0 318 aa11.9□□□□□ -0.5
USP39-205ENST00000442708 MAP6D1Q9H9H5 199 aa11.9□□□□□ -0.5
USP39-205ENST00000442708 A0A1B0GVG6 124 aa11.89□□□□□ -0.51
USP39-205ENST00000442708 COX7A2P2O60397 106 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms