RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 LSM5Q9Y4Y9 91 aaKnown RBP11.18□□□□□ -0.62
LIMS3-201ENST00000437679 AGRNO00468 2067 aa11.18□□□□□ -0.62
LIMS3-201ENST00000437679 KMT2CQ8NEZ4 4911 aaKnown RBP11.18□□□□□ -0.62
LIMS3-201ENST00000437679 C7orf66A4D0T2 115 aa11.17□□□□□ -0.62
LIMS3-201ENST00000437679 FNDC10F2Z333 226 aa11.17□□□□□ -0.62
LIMS3-201ENST00000437679 CCNKO75909 580 aa11.17□□□□□ -0.62
LIMS3-201ENST00000437679 ORM2P19652 201 aa11.17□□□□□ -0.62
LIMS3-201ENST00000437679 GATA2P23769 480 aaPredicted RBP11.17□□□□□ -0.62
LIMS3-201ENST00000437679 CYP2G1PQ6ZSU1 146 aa11.17□□□□□ -0.62
LIMS3-201ENST00000437679 OR8I2Q8N0Y5 310 aa11.17□□□□□ -0.62
LIMS3-201ENST00000437679 TMEM147Q9BVK8 224 aa11.17□□□□□ -0.62
LIMS3-201ENST00000437679 NPVFQ9HCQ7 196 aa11.17□□□□□ -0.62
LIMS3-201ENST00000437679 SLC45A2Q9UMX9 530 aa11.17□□□□□ -0.62
LIMS3-201ENST00000437679 KNCNA6PVL3 124 aa11.16□□□□□ -0.62
LIMS3-201ENST00000437679 K7EPK0 472 aa11.16□□□□□ -0.62
LIMS3-201ENST00000437679 CA1P00915 261 aaPredicted RBP11.16□□□□□ -0.62
LIMS3-201ENST00000437679 PVALBP20472 110 aaPredicted RBP11.16□□□□□ -0.62
LIMS3-201ENST00000437679 BCAP31P51572 246 aa11.16□□□□□ -0.62
LIMS3-201ENST00000437679 DEFA1P59665 94 aa11.16□□□□□ -0.62
LIMS3-201ENST00000437679 DEFA3P59666 94 aa11.16□□□□□ -0.62
LIMS3-201ENST00000437679 IFITM3Q01628 133 aa11.16□□□□□ -0.62
LIMS3-201ENST00000437679 ACTL10Q5JWF8 245 aa11.16□□□□□ -0.62
LIMS3-201ENST00000437679 TMEM182Q6ZP80 229 aaPredicted RBP11.16□□□□□ -0.62
LIMS3-201ENST00000437679 OR1B1Q8NGR6 318 aa11.16□□□□□ -0.62
LIMS3-201ENST00000437679 GATAD1Q8WUU5 269 aa11.16□□□□□ -0.62
LIMS3-201ENST00000437679 ID1P41134 155 aa11.15□□□□□ -0.62
LIMS3-201ENST00000437679 S100A10P60903 97 aa11.15□□□□□ -0.62
LIMS3-201ENST00000437679 SELENOTP62341 195 aa11.15□□□□□ -0.62
LIMS3-201ENST00000437679 MORN3Q6PF18 240 aaPredicted RBP11.15□□□□□ -0.62
LIMS3-201ENST00000437679 TEPPQ6URK8 271 aa11.15□□□□□ -0.62
LIMS3-201ENST00000437679 NRARPQ7Z6K4 114 aa11.15□□□□□ -0.62
LIMS3-201ENST00000437679 TRPT1Q86TN4 253 aaKnown RBP11.15□□□□□ -0.62
LIMS3-201ENST00000437679 GGACTQ9BVM4 153 aa11.15□□□□□ -0.62
LIMS3-201ENST00000437679 A0A0J9YWU9 116 aa11.14□□□□□ -0.63
LIMS3-201ENST00000437679 ZNF98A6NK75 572 aa11.14□□□□□ -0.63
LIMS3-201ENST00000437679 INMT-MINDY4F8WBC2 141 aa11.14□□□□□ -0.63
LIMS3-201ENST00000437679 PRAF2O60831 178 aa11.14□□□□□ -0.63
LIMS3-201ENST00000437679 DEDDO75618 318 aa11.14□□□□□ -0.63
LIMS3-201ENST00000437679 SPP1P10451 314 aa11.14□□□□□ -0.63
LIMS3-201ENST00000437679 GALR1P47211 349 aa11.14□□□□□ -0.63
LIMS3-201ENST00000437679 CAV2P51636 162 aa11.14□□□□□ -0.63
LIMS3-201ENST00000437679 SAMD13Q5VXD3 122 aa11.14□□□□□ -0.63
LIMS3-201ENST00000437679 TMEM217Q8N7C4 229 aa11.14□□□□□ -0.63
LIMS3-201ENST00000437679 RARRES2Q99969 163 aa11.14□□□□□ -0.63
LIMS3-201ENST00000437679 SLC25A22Q9H936 323 aa11.14□□□□□ -0.63
LIMS3-201ENST00000437679 HYPMO75409 117 aa11.13□□□□□ -0.63
LIMS3-201ENST00000437679 LINC00869P0C866 280 aa11.13□□□□□ -0.63
LIMS3-201ENST00000437679 RAP2BP61225 183 aa11.13□□□□□ -0.63
LIMS3-201ENST00000437679 ARL16Q0P5N6 197 aa11.13□□□□□ -0.63
LIMS3-201ENST00000437679 TMEM41BQ5BJD5 291 aa11.13□□□□□ -0.63
LIMS3-201ENST00000437679 S100A7AQ86SG5 101 aa11.13□□□□□ -0.63
LIMS3-201ENST00000437679 OR11H2Q8NH07 326 aa11.13□□□□□ -0.63
LIMS3-201ENST00000437679 LINC00052Q96N35 136 aa11.13□□□□□ -0.63
LIMS3-201ENST00000437679 DOK5Q9P104 306 aa11.13□□□□□ -0.63
LIMS3-201ENST00000437679 HIGD1AQ9Y241 93 aa11.13□□□□□ -0.63
LIMS3-201ENST00000437679 PSMB3P49720 205 aa11.12□□□□□ -0.63
LIMS3-201ENST00000437679 MEOX2P50222 304 aa11.12□□□□□ -0.63
LIMS3-201ENST00000437679 SLC38A11Q08AI6 406 aa11.12□□□□□ -0.63
LIMS3-201ENST00000437679 RAB32Q13637 225 aa11.12□□□□□ -0.63
LIMS3-201ENST00000437679 GPR82Q96P67 336 aa11.12□□□□□ -0.63
LIMS3-201ENST00000437679 SLC25A32Q9H2D1 315 aa11.12□□□□□ -0.63
LIMS3-201ENST00000437679 FAM24AA6NFZ4 105 aa11.11□□□□□ -0.63
LIMS3-201ENST00000437679 GOSR2O14653 212 aa11.11□□□□□ -0.63
LIMS3-201ENST00000437679 CST7O76096 145 aa11.11□□□□□ -0.63
LIMS3-201ENST00000437679 OR5G3P0C626 314 aa11.11□□□□□ -0.63
LIMS3-201ENST00000437679 PLP1P60201 277 aa11.11□□□□□ -0.63
LIMS3-201ENST00000437679 NUTF2P61970 127 aaKnown RBP11.11□□□□□ -0.63
LIMS3-201ENST00000437679 IL15RAQ13261 267 aa11.11□□□□□ -0.63
LIMS3-201ENST00000437679 ZNF546Q86UE3 836 aa11.11□□□□□ -0.63
LIMS3-201ENST00000437679 C16orf92Q96LL3 132 aa11.11□□□□□ -0.63
LIMS3-201ENST00000437679 MARVELD1Q9BSK0 173 aa11.11□□□□□ -0.63
LIMS3-201ENST00000437679 SHANK2-AS3Q9BTD1 123 aa11.11□□□□□ -0.63
LIMS3-201ENST00000437679 RSG1Q9BU20 258 aa11.11□□□□□ -0.63
LIMS3-201ENST00000437679 SLC25A39Q9BZJ4 359 aaPredicted RBP11.11□□□□□ -0.63
LIMS3-201ENST00000437679 C11orf1Q9H5F2 150 aa11.11□□□□□ -0.63
LIMS3-201ENST00000437679 LYRM2Q9NU23 88 aaPredicted RBP11.11□□□□□ -0.63
LIMS3-201ENST00000437679 CSMD3Q7Z407 3707 aa11.11□□□□□ -0.63
LIMS3-201ENST00000437679 STARD9Q9P2P6 4700 aa11.1□□□□□ -0.63
LIMS3-201ENST00000437679 H3BRN7 92 aa11.1□□□□□ -0.63
LIMS3-201ENST00000437679 ISLRO14498 428 aa11.1□□□□□ -0.63
LIMS3-201ENST00000437679 SOCS3O14543 225 aa11.1□□□□□ -0.63
LIMS3-201ENST00000437679 AGPAT2O15120 278 aa11.1□□□□□ -0.63
LIMS3-201ENST00000437679 ATF4P18848 351 aaPredicted RBP11.1□□□□□ -0.63
LIMS3-201ENST00000437679 RAB31Q13636 194 aa11.1□□□□□ -0.63
LIMS3-201ENST00000437679 PXDC1Q5TGL8 231 aa11.1□□□□□ -0.63
LIMS3-201ENST00000437679 STX12Q86Y82 276 aa11.1□□□□□ -0.63
LIMS3-201ENST00000437679 SCRT1Q9BWW7 348 aa11.1□□□□□ -0.63
LIMS3-201ENST00000437679 ARL6Q9H0F7 186 aa11.1□□□□□ -0.63
LIMS3-201ENST00000437679 RNF24Q9Y225 148 aa11.1□□□□□ -0.63
LIMS3-201ENST00000437679 DYNC2H1Q8NCM8 4307 aaKnown RBP11.09□□□□□ -0.63
LIMS3-201ENST00000437679 H3BMM0 161 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 SIX6O95475 246 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 RLN2P04090 185 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 GIG44P09565 113 aaPredicted RBP11.09□□□□□ -0.63
LIMS3-201ENST00000437679 HLA-DRB4P13762 266 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 RPL7P18124 248 aaKnown RBP11.09□□□□□ -0.63
LIMS3-201ENST00000437679 C4BPBP20851 252 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 S100A11P31949 105 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 SULT1A1P50225 295 aa11.09□□□□□ -0.63
LIMS3-201ENST00000437679 HBG1P69891 147 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms