RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ISLRO14498 428 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 CD99P14209 185 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 RPL27AP46776 148 aaKnown RBP6.68□□□□□ -1.34
CD44-208ENST00000428726 PRR20EP86478 221 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 PRR20CP86479 221 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 PRR20DP86480 221 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 PRR20BP86481 221 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 PRR20AP86496 221 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 TIGITQ495A1 244 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 TMEM144Q7Z5S9 345 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 C8orf31Q8N9H6 132 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 TP53TG3Q9ULZ0 132 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 SLC45A2Q9UMX9 530 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 PGPA6NDG6 321 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 SRP14P37108 136 aaKnown RBP6.68□□□□□ -1.34
CD44-208ENST00000428726 GNG4P50150 75 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 KLRB1Q12918 225 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 PMCHL1Q16048 86 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 ECSCRQ19T08 205 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 TMEM177Q53S58 311 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 ZNF841Q6ZN19 808 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 LINC00311Q8N616 119 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 VSTM2AQ8TAG5 236 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 ST6GALNAC6Q969X2 333 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 KAAG1Q9UBP8 84 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 ITPR2Q14571 2701 aa6.68□□□□□ -1.34
CD44-208ENST00000428726 BUB1B-PAK6H3BSN5 160 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 J3KRW8 73 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 M0R3E3 92 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 NUTF2P61970 127 aaKnown RBP6.67□□□□□ -1.34
CD44-208ENST00000428726 RPL19P84098 196 aaKnown RBP6.67□□□□□ -1.34
CD44-208ENST00000428726 DMRTA1Q5VZB9 504 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 C10orf113Q5VZT2 155 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 PDPNQ86YL7 162 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 OR4A5Q8NH83 315 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 OR5R1Q8NH85 324 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 ZNF596Q8TC21 504 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 SRSF12Q8WXF0 261 aaKnown RBP6.67□□□□□ -1.34
CD44-208ENST00000428726 BPESC1Q9GZL8 116 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 DLL1O00548 723 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 SLC25A5P05141 298 aaKnown RBP6.67□□□□□ -1.34
CD44-208ENST00000428726 USF1P22415 310 aaPredicted RBP6.67□□□□□ -1.34
CD44-208ENST00000428726 AMTP48728 403 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 LY6EQ16553 131 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 VMA21Q3ZAQ7 101 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 PPP1R27Q86WC6 154 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 CLEC7AQ9BXN2 247 aa6.67□□□□□ -1.34
CD44-208ENST00000428726 INS-IGF2F8WCM5 200 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 GGCTO75223 188 aaKnown RBP6.66□□□□□ -1.34
CD44-208ENST00000428726 OR2J3O76001 311 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 LINC00310P59036 64 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 RPL15P61313 204 aaKnown RBP6.66□□□□□ -1.34
CD44-208ENST00000428726 MMD2Q8IY49 270 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 OR8B3Q8NGG8 313 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 DEFB104AQ8WTQ1 72 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 OR8B2Q96RD0 313 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 PAXXQ9BUH6 204 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 C19orf24Q9BVV8 132 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 DNAJC4Q9NNZ3 241 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 SIGLEC9Q9Y336 463 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 HELZ2Q9BYK8 2649 aaKnown RBP6.66□□□□□ -1.34
CD44-208ENST00000428726 IGKV1D-37A0A075B6S9 117 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 M0R143 59 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 SPRY2O43597 315 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 PSG1P11464 419 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 FOXA3P55318 350 aaPredicted RBP6.66□□□□□ -1.34
CD44-208ENST00000428726 DLX6P56179 175 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 NDPQ00604 133 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 MRGPRG-AS1Q2M3A8 158 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 TMEM167AQ8TBQ9 72 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 CACNG8Q8WXS5 425 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 SLC25A2Q9BXI2 301 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 CHODLQ9H9P2 273 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 ARL2-SNX15V9GYD0 113 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 IGLC7A0M8Q6 106 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 OR2T8A6NH00 312 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 G3V318 75 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 GCGP01275 180 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 TYMSP04818 313 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 HLA-DMBP28068 263 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 SRIP30626 198 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 MC5RP33032 325 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 GNB4Q9HAV0 340 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 TMEM167BQ9NRX6 74 aa6.66□□□□□ -1.34
CD44-208ENST00000428726 LOC105371242A0A075B767 164 aa6.65□□□□□ -1.34
CD44-208ENST00000428726 ZNF253O75346 499 aa6.65□□□□□ -1.34
CD44-208ENST00000428726 AMY1AP04745 511 aa6.65□□□□□ -1.34
CD44-208ENST00000428726 FCGR2BP31994 310 aaPredicted RBP6.65□□□□□ -1.34
CD44-208ENST00000428726 DEFB1P60022 68 aa6.65□□□□□ -1.34
CD44-208ENST00000428726 VMO1Q7Z5L0 202 aa6.65□□□□□ -1.34
CD44-208ENST00000428726 TECRQ9NZ01 308 aaKnown RBP6.65□□□□□ -1.34
CD44-208ENST00000428726 FBXL7Q9UJT9 491 aa6.65□□□□□ -1.34
CD44-208ENST00000428726 C8orf88P0DMB2 117 aa6.65□□□□□ -1.35
CD44-208ENST00000428726 ZNF138P52744 262 aa6.65□□□□□ -1.35
CD44-208ENST00000428726 SUB1P53999 127 aaKnown RBP eCLIP6.65□□□□□ -1.35
CD44-208ENST00000428726 TAS2R45P59539 299 aa6.65□□□□□ -1.35
CD44-208ENST00000428726 HIST2H2BCQ6DN03 193 aa6.65□□□□□ -1.35
CD44-208ENST00000428726 LINC00322Q6ZN03 302 aaPredicted RBP6.65□□□□□ -1.35
CD44-208ENST00000428726 CIARTQ8N365 385 aaPredicted RBP6.65□□□□□ -1.35
CD44-208ENST00000428726 SIGLECL1Q8N7X8 197 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms