RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 HNF1AP20823 631 aa11.77□□□□□ -0.52
USP4-203ENST00000415188 CEACAM3P40198 252 aa11.77□□□□□ -0.52
USP4-203ENST00000415188 SSBP2P81877 361 aaPredicted RBP11.77□□□□□ -0.52
USP4-203ENST00000415188 FAM120AOSQ5T036 256 aa11.77□□□□□ -0.52
USP4-203ENST00000415188 WDR73Q6P4I2 378 aa11.77□□□□□ -0.52
USP4-203ENST00000415188 PATE2Q6UY27 113 aa11.77□□□□□ -0.52
USP4-203ENST00000415188 OR11H6Q8NGC7 330 aa11.77□□□□□ -0.52
USP4-203ENST00000415188 MISP3Q96FF7 219 aa11.77□□□□□ -0.52
USP4-203ENST00000415188 TEX22C9J3V5 150 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 MT-ND6P03923 174 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 COX7A1P24310 79 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 SRSF2Q01130 221 aaKnown RBP11.76□□□□□ -0.53
USP4-203ENST00000415188 TPTE2P1Q5T6R2 138 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 OR1L6Q8NGR2 347 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 SMIM12Q96EX1 92 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.76□□□□□ -0.535e-7■■■■■ 49.5
USP4-203ENST00000415188 TRAV5A0A0B4J249 113 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 C22orf46C9J442 243 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 REG1AP05451 166 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 SRD5A1P18405 259 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 FAM231DQ6ZW35 169 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 ZNF329Q86UD4 541 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 GBGT1Q8N5D6 347 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 TMEM158Q8WZ71 300 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 FXYD5Q96DB9 178 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 CHRDL1Q9BU40 450 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 GNB1LQ9BYB4 327 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 MRPL36Q9P0J6 103 aaKnown RBP11.76□□□□□ -0.53
USP4-203ENST00000415188 ONECUT1Q9UBC0 465 aa11.76□□□□□ -0.53
USP4-203ENST00000415188 FBN3Q75N90 2809 aa11.75□□□□□ -0.53
USP4-203ENST00000415188 SLC17A3O00476 420 aa11.75□□□□□ -0.53
USP4-203ENST00000415188 PEX7O00628 323 aa11.75□□□□□ -0.53
USP4-203ENST00000415188 HYPMO75409 117 aa11.75□□□□□ -0.53
USP4-203ENST00000415188 IGLV2-8P01709 118 aa11.75□□□□□ -0.53
USP4-203ENST00000415188 HTR1DP28221 377 aa11.75□□□□□ -0.53
USP4-203ENST00000415188 MFAP2P55001 183 aa11.75□□□□□ -0.53
USP4-203ENST00000415188 MORN5Q5VZ52 161 aa11.75□□□□□ -0.53
USP4-203ENST00000415188 HCP5Q6MZN7 132 aa11.75□□□□□ -0.53
USP4-203ENST00000415188 LINC00305Q7Z4B0 112 aa11.75□□□□□ -0.53
USP4-203ENST00000415188 SRSF12Q8WXF0 261 aaKnown RBP11.75□□□□□ -0.53
USP4-203ENST00000415188 DPM3Q9P2X0 92 aa11.75□□□□□ -0.53
USP4-203ENST00000415188 CNTFRP26992 372 aa11.74□□□□□ -0.53
USP4-203ENST00000415188 MYCNOSP40205 109 aa11.74□□□□□ -0.53
USP4-203ENST00000415188 PKIAP61925 76 aa11.74□□□□□ -0.53
USP4-203ENST00000415188 CX3CL1P78423 397 aa11.74□□□□□ -0.53
USP4-203ENST00000415188 KRTAP24-1Q3LI83 254 aa11.74□□□□□ -0.53
USP4-203ENST00000415188 C1orf122Q6ZSJ8 110 aa11.74□□□□□ -0.53
USP4-203ENST00000415188 KIR3DL3Q8N743 410 aa11.74□□□□□ -0.53
USP4-203ENST00000415188 PRDM13Q9H4Q3 707 aa11.74□□□□□ -0.53
USP4-203ENST00000415188 OOSP1A8MZH6 123 aa11.73□□□□□ -0.53
USP4-203ENST00000415188 PYYP10082 97 aa11.73□□□□□ -0.53
USP4-203ENST00000415188 ADMP35318 185 aa11.73□□□□□ -0.53
USP4-203ENST00000415188 OR5I1Q13606 314 aa11.73□□□□□ -0.53
USP4-203ENST00000415188 IBA57Q5T440 356 aaKnown RBP11.73□□□□□ -0.53
USP4-203ENST00000415188 LINC01356Q8N9X3 169 aa11.73□□□□□ -0.53
USP4-203ENST00000415188 MRPL18Q9H0U6 180 aaKnown RBP11.73□□□□□ -0.53
USP4-203ENST00000415188 LOC105371242A0A075B767 164 aa11.72□□□□□ -0.53
USP4-203ENST00000415188 SMIM27A0A1W2PRY6 76 aa11.72□□□□□ -0.53
USP4-203ENST00000415188 ODF3BA8MYP8 253 aa11.72□□□□□ -0.53
USP4-203ENST00000415188 MOSP00540 346 aa11.72□□□□□ -0.53
USP4-203ENST00000415188 ESDP10768 282 aa11.72□□□□□ -0.53
USP4-203ENST00000415188 PRTN3P24158 256 aa11.72□□□□□ -0.53
USP4-203ENST00000415188 PLGLAQ15195 96 aa11.72□□□□□ -0.53
USP4-203ENST00000415188 TMEM183BQ1AE95 376 aa11.72□□□□□ -0.53
USP4-203ENST00000415188 RASL11AQ6T310 242 aa11.72□□□□□ -0.53
USP4-203ENST00000415188 NPBQ8NG41 125 aa11.72□□□□□ -0.53
USP4-203ENST00000415188 OR1B1Q8NGR6 318 aa11.72□□□□□ -0.53
USP4-203ENST00000415188 SSBP3Q9BWW4 388 aaPredicted RBP11.72□□□□□ -0.53
USP4-203ENST00000415188 FBXL15Q9H469 300 aa11.72□□□□□ -0.53
USP4-203ENST00000415188 TSTD3H0UI37 97 aa11.71□□□□□ -0.53
USP4-203ENST00000415188 TIMM23O14925 209 aa11.71□□□□□ -0.53
USP4-203ENST00000415188 NBR2O15453 112 aa11.71□□□□□ -0.53
USP4-203ENST00000415188 NDUFA3O95167 84 aa11.71□□□□□ -0.53
USP4-203ENST00000415188 ORM2P19652 201 aa11.71□□□□□ -0.53
USP4-203ENST00000415188 GPR6P46095 362 aaPredicted RBP11.71□□□□□ -0.53
USP4-203ENST00000415188 Q0VG73 95 aa11.71□□□□□ -0.53
USP4-203ENST00000415188 CCDC144NLQ6NUI1 221 aa11.71□□□□□ -0.53
USP4-203ENST00000415188 OR8I2Q8N0Y5 310 aa11.71□□□□□ -0.53
USP4-203ENST00000415188 TMEM14CQ9P0S9 112 aa11.71□□□□□ -0.53
USP4-203ENST00000415188 EPDR1Q9UM22 224 aa11.71□□□□□ -0.53
USP4-203ENST00000415188 HIGD1AQ9Y241 93 aa11.71□□□□□ -0.53
USP4-203ENST00000415188 KLF12Q9Y4X4 402 aa11.71□□□□□ -0.53
USP4-203ENST00000415188 IZUMO1RA6ND01 250 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 I3L2K1 104 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 FCN1O00602 326 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 IGHV3-48P01763 117 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 HLA-DQA1P01909 254 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 AMY1AP04745 511 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 IGLC1P0CG04 106 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 GZMBP10144 247 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 MGST1P10620 155 aaKnown RBP11.7□□□□□ -0.54
USP4-203ENST00000415188 CBLN1P23435 193 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 PAFAH1B2P68402 229 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 CDPF1Q6NVV7 123 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 BAGE2Q86Y30 109 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 C5orf17Q8NAS9 161 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 CFHR4Q92496 578 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 RNASE7Q9H1E1 156 aaKnown RBP11.7□□□□□ -0.54
USP4-203ENST00000415188 ZNF705GA8MUZ8 300 aaPredicted RBP11.7□□□□□ -0.54
USP4-203ENST00000415188 SNURFLB1AK76 121 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms