RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 AMBPP02760 352 aa11.13□□□□□ -0.63
CCDC88A-204ENST00000413716 PCOLCEQ15113 449 aa11.13□□□□□ -0.63
CCDC88A-204ENST00000413716 AGRNO00468 2067 aa11.13□□□□□ -0.63
CCDC88A-204ENST00000413716 J3QW42 95 aa11.13□□□□□ -0.63
CCDC88A-204ENST00000413716 PAX8Q06710 450 aa11.13□□□□□ -0.63
CCDC88A-204ENST00000413716 TNRC6BQ9UPQ9 1833 aaKnown RBP11.13□□□□□ -0.63
CCDC88A-204ENST00000413716 C3orf36Q3SXR2 165 aa11.13□□□□□ -0.63
CCDC88A-204ENST00000413716 FOXD3Q9UJU5 478 aaPredicted RBP11.13□□□□□ -0.63
CCDC88A-204ENST00000413716 ZNF831Q5JPB2 1677 aa11.13□□□□□ -0.63
CCDC88A-204ENST00000413716 FOXG1P55316 489 aaPredicted RBP11.13□□□□□ -0.63
CCDC88A-204ENST00000413716 C8orf31Q8N9H6 132 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 PRB4P10163 310 aaPredicted RBP11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 CCL4P13236 92 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 GAGE7O76087 117 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 GAGE12FP0CL80 117 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 GAGE12GP0CL81 117 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 GAGE12IP0CL82 117 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 TEX38Q6PEX7 206 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 FAM90A1Q86YD7 464 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 LINC00312Q9Y6C7 94 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 PLXNA2O75051 1894 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 BRWD3Q6RI45 1802 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 BOD1L2Q8IYS8 172 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 PRSS22Q9GZN4 317 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 FGF11Q92914 225 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 LIMS1P48059 325 aa11.12□□□□□ -0.63
CCDC88A-204ENST00000413716 C17orf98A8MV24 154 aa11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 J3KT08 172 aa11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 PRRC2AP48634 2157 aaKnown RBP11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 COL22A1Q8NFW1 1626 aaPredicted RBP11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 NEU4Q8WWR8 484 aaPredicted RBP11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 SAA2-SAA4A0A096LPE2 208 aa11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 SAA2P0DJI9 122 aaPredicted RBP11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 GAS1P54826 345 aa11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 TMEM243Q9BU79 118 aa11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 NSUN5P1Q3KNT7 163 aa11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 C1QTNF4Q9BXJ3 329 aa11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 YBX2Q9Y2T7 364 aaKnown RBP11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 CEACAM1P13688 526 aa11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 TSSC4Q9Y5U2 329 aaPredicted RBP11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 GATA2P23769 480 aaPredicted RBP11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 TCF20Q9UGU0 1960 aaKnown RBP11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 TRAV13-2A0A0B4J235 113 aa11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 EFNB3Q15768 340 aa11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 FAM219BQ5XKK7 198 aa11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 C7orf69Q9H7B7 122 aa11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 PILRAQ9UKJ1 303 aa11.11□□□□□ -0.63
CCDC88A-204ENST00000413716 UCP1P25874 307 aa11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 IFITM3Q01628 133 aa11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 MP68P56378 58 aa11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 ZNF525Q8N782 197 aa11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 SRRM4A7MD48 611 aaKnown RBP11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 MRPL55Q7Z7F7 128 aaKnown RBP11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 IGKV2-40A0A087WW87 121 aaPredicted RBP11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 IGKV2D-40P01614 121 aaPredicted RBP11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 Q5BKY6 102 aa11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 MORN5Q5VZ52 161 aa11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 RAMP3O60896 148 aa11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 SAP30O75446 220 aa11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 CGB3P0DN86 165 aa11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 OCC1Q8TAD7 63 aa11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 TMEM158Q8WZ71 300 aa11.1□□□□□ -0.63
CCDC88A-204ENST00000413716 ADAMTSL3P82987 1691 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 IGKV1D-16P01601 117 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 PYYP10082 97 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 BSPH1Q075Z2 132 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 ANXA2RQ3ZCQ2 193 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 SCRT2Q9NQ03 307 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 C22orf46C9J442 243 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 SYNJ2BPP57105 145 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 C9orf118A6NHY6 69 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 CGB7P0DN87 165 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 GAGE12HA6NDE8 117 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 WNT2P09544 360 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 Q6ZT83 130 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 MBNL3Q9NUK0 354 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 AZU1P20160 251 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 KNCNA6PVL3 124 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 C18orf12Q96KH6 178 aa11.09□□□□□ -0.63
CCDC88A-204ENST00000413716 WFDC12Q8WWY7 111 aa11.08□□□□□ -0.64
CCDC88A-204ENST00000413716 TM2D1Q9BX74 207 aa11.08□□□□□ -0.64
CCDC88A-204ENST00000413716 DTX4Q9Y2E6 619 aa11.08□□□□□ -0.64
CCDC88A-204ENST00000413716 MRPL27Q9P0M9 148 aaKnown RBP11.08□□□□□ -0.64
CCDC88A-204ENST00000413716 IGFBP3P17936 291 aaPredicted RBP11.08□□□□□ -0.64
CCDC88A-204ENST00000413716 TMEM92Q6UXU6 159 aa11.08□□□□□ -0.64
CCDC88A-204ENST00000413716 MDS2Q8NDY4 140 aa11.08□□□□□ -0.64
CCDC88A-204ENST00000413716 C14orf132Q9NPU4 83 aa11.08□□□□□ -0.64
CCDC88A-204ENST00000413716 C8orf82Q6P1X6 216 aaPredicted RBP11.08□□□□□ -0.64
CCDC88A-204ENST00000413716 MGAMO43451 1857 aa11.08□□□□□ -0.64
CCDC88A-204ENST00000413716 NBASA2RRP1 2371 aa11.08□□□□□ -0.64
CCDC88A-204ENST00000413716 SPSB3Q6PJ21 355 aa11.08□□□□□ -0.64
CCDC88A-204ENST00000413716 SS18L2Q9UHA2 77 aa11.08□□□□□ -0.64
CCDC88A-204ENST00000413716 NUP35Q8NFH5 326 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 C12orf77C9JDV5 145 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 NOVP48745 357 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 AMN1Q8IY45 258 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 TMEM141Q96I45 108 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 CACNA1HO95180 2353 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 DEPPQ9NTK1 212 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms