RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 RNF7Q9UBF6 113 aa12.89□□□□□ -0.35
CHMP1A-201ENST00000397901 HSPB8Q9UJY1 196 aa12.89□□□□□ -0.35
CHMP1A-201ENST00000397901 HSD52Q0P140 79 aa12.88□□□□□ -0.35
CHMP1A-201ENST00000397901 PRR31Q5SQ13 230 aa12.88□□□□□ -0.35
CHMP1A-201ENST00000397901 LINC01545Q5VT33 79 aa12.88□□□□□ -0.35
CHMP1A-201ENST00000397901 FAM167A-AS1Q96KT0 104 aa12.88□□□□□ -0.35
CHMP1A-201ENST00000397901 SELENOKQ9Y6D0 94 aa12.88□□□□□ -0.35
CHMP1A-201ENST00000397901 RAI1Q7Z5J4 1906 aaPredicted RBP12.88□□□□□ -0.35
CHMP1A-201ENST00000397901 SEM1Q6ZVN7 128 aa12.88□□□□□ -0.35
CHMP1A-201ENST00000397901 SPCS1Q9Y6A9 102 aa12.88□□□□□ -0.35
CHMP1A-201ENST00000397901 HIGD1CA8MV81 97 aa12.87□□□□□ -0.35
CHMP1A-201ENST00000397901 GLRXP35754 106 aa12.87□□□□□ -0.35
CHMP1A-201ENST00000397901 FOXE3Q13461 319 aa12.87□□□□□ -0.35
CHMP1A-201ENST00000397901 KIR3DS1Q14943 382 aa12.87□□□□□ -0.35
CHMP1A-201ENST00000397901 SLC25A48Q6ZT89 311 aaKnown RBP12.87□□□□□ -0.35
CHMP1A-201ENST00000397901 MRPL20Q9BYC9 149 aaKnown RBP12.87□□□□□ -0.35
CHMP1A-201ENST00000397901 A0A1W2PPM0 123 aa12.87□□□□□ -0.35
CHMP1A-201ENST00000397901 TNFAIP6P98066 277 aaPredicted RBP12.87□□□□□ -0.35
CHMP1A-201ENST00000397901 OR1L8Q8NGR8 309 aa12.87□□□□□ -0.35
CHMP1A-201ENST00000397901 FAM222BQ8WU58 562 aa12.87□□□□□ -0.35
CHMP1A-201ENST00000397901 C19orf24Q9BVV8 132 aa12.87□□□□□ -0.35
CHMP1A-201ENST00000397901 RPUSD1Q9UJJ7 312 aaKnown RBP12.87□□□□□ -0.35
CHMP1A-201ENST00000397901 AMMECR1Q9Y4X0 333 aaPredicted RBP12.87□□□□□ -0.35
CHMP1A-201ENST00000397901 TMEM189A5PLL7 270 aa12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 E7EUB6 86 aa12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 RPL24P83731 157 aaKnown RBP12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 HARBI1Q96MB7 349 aa12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 NAV3Q8IVL0 2385 aa12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 SNAI2O43623 268 aa12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 COX7A2P2O60397 106 aa12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 PLAUP00749 431 aa12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 HBBP68871 147 aa12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 ZNF474Q6S9Z5 364 aaPredicted RBP12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 RPRMLQ8N4K4 120 aa12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 NAA38Q9BRA0 125 aaKnown RBP12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 MCRIP2Q9BUT9 160 aaKnown RBP12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 MRPL32Q9BYC8 188 aaKnown RBP12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 THYN1Q9P016 225 aa12.86□□□□□ -0.35
CHMP1A-201ENST00000397901 H0Y8G0 127 aa12.85□□□□□ -0.35
CHMP1A-201ENST00000397901 FOXA3P55318 350 aaPredicted RBP12.85□□□□□ -0.35
CHMP1A-201ENST00000397901 C10orf55Q5SWW7 151 aa12.85□□□□□ -0.35
CHMP1A-201ENST00000397901 FAM169BQ8N8A8 192 aa12.85□□□□□ -0.35
CHMP1A-201ENST00000397901 PRSS33Q8NF86 280 aa12.85□□□□□ -0.35
CHMP1A-201ENST00000397901 DPF1Q92782 380 aa12.85□□□□□ -0.35
CHMP1A-201ENST00000397901 PERPQ96FX8 193 aa12.85□□□□□ -0.35
CHMP1A-201ENST00000397901 DLL1O00548 723 aa12.85□□□□□ -0.35
CHMP1A-201ENST00000397901 IGHV1-46P01743 117 aa12.85□□□□□ -0.35
CHMP1A-201ENST00000397901 RAB9AP51151 201 aa12.85□□□□□ -0.35
CHMP1A-201ENST00000397901 SGK494Q96LW2 274 aa12.85□□□□□ -0.35
CHMP1A-201ENST00000397901 PAXXQ9BUH6 204 aa12.85□□□□□ -0.35
CHMP1A-201ENST00000397901 TEX48A0A1B0GUV7 120 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 GNG5P63218 68 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 ERHP84090 104 aaKnown RBP12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 CD300EQ496F6 205 aaPredicted RBP12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 ZNF329Q86UD4 541 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 ZADH2Q8N4Q0 377 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 RABAC1Q9UI14 185 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 IGLV3-9A0A075B6K5 115 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 PEX7O00628 323 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 FGF6P10767 208 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 FABP2P12104 132 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 TIMM23BQ5SRD1 257 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 C10orf113Q5VZT2 155 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 IGFL3Q6UXB1 125 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 ZNF788Q6ZQV5 615 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 FA2HQ7L5A8 372 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 NPIPB3Q92617 1050 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 NDUFA4L2Q9NRX3 87 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 AKAP13Q12802 2813 aa12.84□□□□□ -0.35
CHMP1A-201ENST00000397901 VWC2LB2RUY7 222 aa12.83□□□□□ -0.36
CHMP1A-201ENST00000397901 TM4SF5O14894 197 aa12.83□□□□□ -0.36
CHMP1A-201ENST00000397901 GATA4P43694 442 aa12.83□□□□□ -0.36
CHMP1A-201ENST00000397901 CKS1BP61024 79 aa12.83□□□□□ -0.36
CHMP1A-201ENST00000397901 MEF2CQ06413 473 aaPredicted RBP12.83□□□□□ -0.36
CHMP1A-201ENST00000397901 ZNF714Q96N38 554 aa12.83□□□□□ -0.36
CHMP1A-201ENST00000397901 ROS1P08922 2347 aa12.83□□□□□ -0.36
CHMP1A-201ENST00000397901 GAGE12HA6NDE8 117 aa12.83□□□□□ -0.36
CHMP1A-201ENST00000397901 CCL3L1P16619 93 aa12.83□□□□□ -0.36
CHMP1A-201ENST00000397901 ATP5IP56385 69 aaPredicted RBP12.83□□□□□ -0.36
CHMP1A-201ENST00000397901 PATE2Q6UY27 113 aa12.83□□□□□ -0.36
CHMP1A-201ENST00000397901 HILPDAQ9Y5L2 63 aa12.83□□□□□ -0.36
CHMP1A-201ENST00000397901 SOX21Q9Y651 276 aaPredicted RBP12.83□□□□□ -0.36
CHMP1A-201ENST00000397901 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 TEX45Q8NA69 505 aa12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 CACNG8Q8WXS5 425 aa12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 ZNF48Q96MX3 618 aaPredicted RBP12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 hADV38S2A0JD32 116 aa12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 MBD3L4A6NDZ8 208 aaPredicted RBP12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 MBD3L3A6NE82 208 aaPredicted RBP12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 MBD3L5A6NJ08 208 aaPredicted RBP12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 FAM87AP0C7U9 286 aa12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 WT1-ASQ06250 92 aa12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 ZNF833PQ6ZTB9 187 aa12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 C22orf34Q6ZV56 151 aa12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 MBD3L2Q8NHZ7 208 aaPredicted RBP12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 OSR1Q8TAX0 266 aaPredicted RBP12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 RAB37Q96AX2 223 aa12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 NDFIP1Q9BT67 221 aa12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 MRPL36Q9P0J6 103 aaKnown RBP12.82□□□□□ -0.36
CHMP1A-201ENST00000397901 MAP1BP46821 2468 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms