RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 H2BFSP57053 126 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 APRG1Q8IVJ8 170 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 DCANP1Q8TF63 244 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 FBXL17Q9UF56 701 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 ALG5Q9Y673 324 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 ORM2P19652 201 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 HBG1P69891 147 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 HBG2P69892 147 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 C1orf194Q5T5A4 169 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 TMEM182Q6ZP80 229 aaPredicted RBP12.59□□□□□ -0.39
CLN3-203ENST00000357806 TMEM252Q8N6L7 170 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 TMEM217Q8N7C4 229 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 OR1B1Q8NGR6 318 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 TMEM147Q9BVK8 224 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 NRN1Q9NPD7 142 aa12.59□□□□□ -0.39
CLN3-203ENST00000357806 IGSF23A1L1A6 192 aa12.58□□□□□ -0.4
CLN3-203ENST00000357806 E5RGE8 158 aa12.58□□□□□ -0.4
CLN3-203ENST00000357806 LINC00869P0C866 280 aa12.58□□□□□ -0.4
CLN3-203ENST00000357806 PET100P0DJ07 73 aa12.58□□□□□ -0.4
CLN3-203ENST00000357806 S100A11P31949 105 aa12.58□□□□□ -0.4
CLN3-203ENST00000357806 APOC4P55056 127 aa12.58□□□□□ -0.4
CLN3-203ENST00000357806 ZNF546Q86UE3 836 aa12.58□□□□□ -0.4
CLN3-203ENST00000357806 FAM24BQ8N5W8 94 aa12.58□□□□□ -0.4
CLN3-203ENST00000357806 PPP1R1CQ8WVI7 109 aa12.58□□□□□ -0.4
CLN3-203ENST00000357806 WWC2-AS2Q96NR7 200 aa12.58□□□□□ -0.4
CLN3-203ENST00000357806 AGRNO00468 2067 aa12.57□□□□□ -0.4
CLN3-203ENST00000357806 DEFB131AP59861 70 aa12.57□□□□□ -0.4
CLN3-203ENST00000357806 ZNF124Q15973 351 aa12.57□□□□□ -0.4
CLN3-203ENST00000357806 STPG3Q8N7X2 389 aa12.57□□□□□ -0.4
CLN3-203ENST00000357806 UQCC1Q9NVA1 299 aa12.57□□□□□ -0.4
CLN3-203ENST00000357806 OR5AC2Q9NZP5 309 aa12.57□□□□□ -0.4
CLN3-203ENST00000357806 AGPAT2O15120 278 aa12.56□□□□□ -0.4
CLN3-203ENST00000357806 ZNF688P0C7X2 276 aa12.56□□□□□ -0.4
CLN3-203ENST00000357806 PLP1P60201 277 aa12.56□□□□□ -0.4
CLN3-203ENST00000357806 RAP2BP61225 183 aa12.56□□□□□ -0.4
CLN3-203ENST00000357806 RGS21Q2M5E4 152 aa12.56□□□□□ -0.4
CLN3-203ENST00000357806 OR8I2Q8N0Y5 310 aa12.56□□□□□ -0.4
CLN3-203ENST00000357806 SLC25A31Q9H0C2 315 aa12.56□□□□□ -0.4
CLN3-203ENST00000357806 DOK5Q9P104 306 aa12.56□□□□□ -0.4
CLN3-203ENST00000357806 KIR2DL5BA0A0G2JN68 375 aa12.55□□□□□ -0.4
CLN3-203ENST00000357806 KIR2DL5BA0A0G2JPC4 375 aa12.55□□□□□ -0.4
CLN3-203ENST00000357806 UBE2L5PA0A1B0GUS4 154 aa12.55□□□□□ -0.4
CLN3-203ENST00000357806 SNRPD3P62318 126 aaKnown RBP12.55□□□□□ -0.4
CLN3-203ENST00000357806 RAB31Q13636 194 aa12.55□□□□□ -0.4
CLN3-203ENST00000357806 VWC2Q2TAL6 325 aa12.55□□□□□ -0.4
CLN3-203ENST00000357806 LEMD1Q68G75 181 aa12.55□□□□□ -0.4
CLN3-203ENST00000357806 S100A7AQ86SG5 101 aa12.55□□□□□ -0.4
CLN3-203ENST00000357806 KIR2DL5AQ8N109 375 aa12.55□□□□□ -0.4
CLN3-203ENST00000357806 KIR2DL5BQ8NHK3 375 aa12.55□□□□□ -0.4
CLN3-203ENST00000357806 MGST2Q99735 147 aa12.55□□□□□ -0.4
CLN3-203ENST00000357806 SLC25A22Q9H936 323 aa12.55□□□□□ -0.4
CLN3-203ENST00000357806 HIGD1AQ9Y241 93 aa12.55□□□□□ -0.4
CLN3-203ENST00000357806 ZNF98A6NK75 572 aa12.54□□□□□ -0.4
CLN3-203ENST00000357806 H0YIZ8 118 aa12.54□□□□□ -0.4
CLN3-203ENST00000357806 HYPMO75409 117 aa12.54□□□□□ -0.4
CLN3-203ENST00000357806 RPL35AP18077 110 aaKnown RBP12.54□□□□□ -0.4
CLN3-203ENST00000357806 EWSR1Q01844 656 aaKnown RBP eCLIP12.54□□□□□ -0.4
CLN3-203ENST00000357806 ATP6V1FQ16864 119 aa12.54□□□□□ -0.4
CLN3-203ENST00000357806 PXDC1Q5TGL8 231 aa12.54□□□□□ -0.4
CLN3-203ENST00000357806 ARL6Q9H0F7 186 aa12.54□□□□□ -0.4
CLN3-203ENST00000357806 SEPSECSQ9HD40 501 aaKnown RBP12.54□□□□□ -0.4
CLN3-203ENST00000357806 RETNQ9HD89 108 aa12.54□□□□□ -0.4
CLN3-203ENST00000357806 TENM3Q9P273 2699 aa12.54□□□□□ -0.4
CLN3-203ENST00000357806 H3BRN7 92 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 UBE2CO00762 179 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 MPC2O95563 127 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 OR5G3P0C626 314 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 GALR1P47211 349 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 CAMLGP49069 296 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 BAXQ07812 192 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 GPR82Q96P67 336 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 SCRT1Q9BWW7 348 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 SLC25A39Q9BZJ4 359 aaPredicted RBP12.53□□□□□ -0.4
CLN3-203ENST00000357806 SLC25A32Q9H2D1 315 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 WDR83OSQ9Y284 106 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 NHLH2Q02577 135 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 PSMG4Q5JS54 123 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 SAMD13Q5VXD3 122 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 STHQ8IWL8 128 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 SHANK2-AS3Q9BTD1 123 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 MED28Q9H204 178 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 RNF24Q9Y225 148 aa12.53□□□□□ -0.4
CLN3-203ENST00000357806 CXCL3P19876 107 aa12.52□□□□□ -0.41
CLN3-203ENST00000357806 MEOX2P50222 304 aa12.52□□□□□ -0.41
CLN3-203ENST00000357806 Q6ZWC4 215 aa12.52□□□□□ -0.41
CLN3-203ENST00000357806 OR5C1Q8NGR4 320 aa12.52□□□□□ -0.41
CLN3-203ENST00000357806 UHRF2Q96PU4 802 aa12.52□□□□□ -0.41
CLN3-203ENST00000357806 ARV1Q9H2C2 271 aa12.52□□□□□ -0.41
CLN3-203ENST00000357806 MPDU1O75352 247 aa12.51□□□□□ -0.41
CLN3-203ENST00000357806 FGF7P21781 194 aa12.51□□□□□ -0.41
CLN3-203ENST00000357806 ID1P41134 155 aa12.51□□□□□ -0.41
CLN3-203ENST00000357806 PSMB3P49720 205 aa12.51□□□□□ -0.41
CLN3-203ENST00000357806 RNF126Q9BV68 326 aa12.51□□□□□ -0.41
CLN3-203ENST00000357806 COX7A2P2O60397 106 aa12.5□□□□□ -0.41
CLN3-203ENST00000357806 RPL7P18124 248 aaKnown RBP12.5□□□□□ -0.41
CLN3-203ENST00000357806 DEFB135Q30KP9 77 aa12.5□□□□□ -0.41
CLN3-203ENST00000357806 Q6ZRG5 221 aa12.5□□□□□ -0.41
CLN3-203ENST00000357806 OR11H7Q8NGC8 314 aa12.5□□□□□ -0.41
CLN3-203ENST00000357806 CSTL1Q9H114 145 aa12.5□□□□□ -0.41
CLN3-203ENST00000357806 MBD2Q9UBB5 411 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms