RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 LY6DQ14210 128 aa15.37■□□□□ 0.05
COL9A3-201ENST00000343916 EPDR1Q9UM22 224 aa15.37■□□□□ 0.05
COL9A3-201ENST00000343916 LOC105371242A0A075B767 164 aa15.36■□□□□ 0.05
COL9A3-201ENST00000343916 PAFAH1B2P68402 229 aa15.36■□□□□ 0.05
COL9A3-201ENST00000343916 STXBP6Q8NFX7 210 aa15.36■□□□□ 0.05
COL9A3-201ENST00000343916 OR11H6Q8NGC7 330 aa15.36■□□□□ 0.05
COL9A3-201ENST00000343916 CFHR4Q92496 578 aa15.36■□□□□ 0.05
COL9A3-201ENST00000343916 SAMD10Q9BYL1 202 aa15.36■□□□□ 0.05
COL9A3-201ENST00000343916 NDUFS7O75251 213 aa15.36■□□□□ 0.05
COL9A3-201ENST00000343916 HES1Q14469 280 aa15.36■□□□□ 0.05
COL9A3-201ENST00000343916 TEX43Q6ZNM6 134 aa15.36■□□□□ 0.05
COL9A3-201ENST00000343916 TMEM136Q6ZRR5 245 aa15.36■□□□□ 0.05
COL9A3-201ENST00000343916 UBE2G1P62253 170 aa15.35■□□□□ 0.05
COL9A3-201ENST00000343916 KLF17Q5JT82 389 aaPredicted RBP15.35■□□□□ 0.05
COL9A3-201ENST00000343916 NUDT10Q8NFP7 164 aa15.35■□□□□ 0.05
COL9A3-201ENST00000343916 NUDT11Q96G61 164 aa15.35■□□□□ 0.05
COL9A3-201ENST00000343916 RNF5Q99942 180 aa15.35■□□□□ 0.05
COL9A3-201ENST00000343916 RNF114Q9Y508 228 aa15.35■□□□□ 0.05
COL9A3-201ENST00000343916 S4R3C0 116 aa15.35■□□□□ 0.05
COL9A3-201ENST00000343916 CACNA1AO00555 2505 aa15.35■□□□□ 0.05
COL9A3-201ENST00000343916 NBR2O15453 112 aa15.35■□□□□ 0.05
COL9A3-201ENST00000343916 RASL11BQ9BPW5 248 aa15.35■□□□□ 0.05
COL9A3-201ENST00000343916 HIGD1AQ9Y241 93 aa15.34■□□□□ 0.05
COL9A3-201ENST00000343916 TRBV9A0A0B4J1U6 114 aa15.34■□□□□ 0.05
COL9A3-201ENST00000343916 IGKV1-17P01599 117 aa15.34■□□□□ 0.05
COL9A3-201ENST00000343916 PLP1P60201 277 aa15.34■□□□□ 0.05
COL9A3-201ENST00000343916 PAX2Q02962 417 aa15.34■□□□□ 0.05
COL9A3-201ENST00000343916 BATFQ16520 125 aa15.34■□□□□ 0.05
COL9A3-201ENST00000343916 TMEM183BQ1AE95 376 aa15.34■□□□□ 0.05
COL9A3-201ENST00000343916 ITPR1Q14643 2758 aa15.34■□□□□ 0.05
COL9A3-201ENST00000343916 K7EIM0 57 aa15.33■□□□□ 0.04
COL9A3-201ENST00000343916 TMEM68Q96MH6 324 aa15.33■□□□□ 0.04
COL9A3-201ENST00000343916 C20orf144Q9BQM9 153 aa15.33■□□□□ 0.04
COL9A3-201ENST00000343916 MIEN1Q9BRT3 115 aa15.33■□□□□ 0.04
COL9A3-201ENST00000343916 VAMP8Q9BV40 100 aa15.33■□□□□ 0.04
COL9A3-201ENST00000343916 Q9H3A6 140 aa15.33■□□□□ 0.04
COL9A3-201ENST00000343916 GNB4Q9HAV0 340 aa15.33■□□□□ 0.04
COL9A3-201ENST00000343916 TOX4O94842 621 aa15.33■□□□□ 0.04
COL9A3-201ENST00000343916 RPLP1P05386 114 aaKnown RBP15.33■□□□□ 0.04
COL9A3-201ENST00000343916 PRB4P10163 310 aaPredicted RBP15.33■□□□□ 0.04
COL9A3-201ENST00000343916 ESDP10768 282 aa15.33■□□□□ 0.04
COL9A3-201ENST00000343916 DYNAPQ8N1N2 210 aa15.33■□□□□ 0.04
COL9A3-201ENST00000343916 NEU4Q8WWR8 484 aaPredicted RBP15.33■□□□□ 0.04
COL9A3-201ENST00000343916 SLC25A39Q9BZJ4 359 aaPredicted RBP15.33■□□□□ 0.04
COL9A3-201ENST00000343916 PRTN3P24158 256 aa15.32■□□□□ 0.04
COL9A3-201ENST00000343916 C7orf69Q9H7B7 122 aa15.32■□□□□ 0.04
COL9A3-201ENST00000343916 IZUMO1RA6ND01 250 aa15.32■□□□□ 0.04
COL9A3-201ENST00000343916 ODF3BA8MYP8 253 aa15.32■□□□□ 0.04
COL9A3-201ENST00000343916 AMY1AP04745 511 aa15.32■□□□□ 0.04
COL9A3-201ENST00000343916 RPL19P84098 196 aaKnown RBP15.32■□□□□ 0.04
COL9A3-201ENST00000343916 WDR73Q6P4I2 378 aa15.32■□□□□ 0.04
COL9A3-201ENST00000343916 MBD6Q96DN6 1003 aa15.32■□□□□ 0.04
COL9A3-201ENST00000343916 FBXL7Q9UJT9 491 aa15.32■□□□□ 0.04
COL9A3-201ENST00000343916 M0R1W7 72 aa15.31■□□□□ 0.04
COL9A3-201ENST00000343916 MT-ND6P03923 174 aa15.31■□□□□ 0.04
COL9A3-201ENST00000343916 ZFP36P26651 326 aaKnown RBP15.31■□□□□ 0.04
COL9A3-201ENST00000343916 CEACAM3P40198 252 aa15.31■□□□□ 0.04
COL9A3-201ENST00000343916 KRTDAPP60985 99 aa15.31■□□□□ 0.04
COL9A3-201ENST00000343916 FAM231DQ6ZW35 169 aa15.31■□□□□ 0.04
COL9A3-201ENST00000343916 TMEM208Q9BTX3 173 aa15.31■□□□□ 0.04
COL9A3-201ENST00000343916 LINC00322Q6ZN03 302 aaPredicted RBP15.31■□□□□ 0.04
COL9A3-201ENST00000343916 VMO1Q7Z5L0 202 aa15.31■□□□□ 0.04
COL9A3-201ENST00000343916 NUP35Q8NFH5 326 aa15.31■□□□□ 0.04
COL9A3-201ENST00000343916 ZNF586Q9NXT0 402 aa15.31■□□□□ 0.04
COL9A3-201ENST00000343916 Q0VG73 95 aa15.3■□□□□ 0.04
COL9A3-201ENST00000343916 PRR31Q5SQ13 230 aa15.3■□□□□ 0.04
COL9A3-201ENST00000343916 EXOC3-AS1Q8N2X6 119 aa15.3■□□□□ 0.04
COL9A3-201ENST00000343916 SIGLECL1Q8N7X8 197 aa15.3■□□□□ 0.04
COL9A3-201ENST00000343916 C5orf17Q8NAS9 161 aa15.3■□□□□ 0.04
COL9A3-201ENST00000343916 RBM14Q96PK6 669 aaKnown RBP15.3■□□□□ 0.04
COL9A3-201ENST00000343916 KLF12Q9Y4X4 402 aa15.3■□□□□ 0.04
COL9A3-201ENST00000343916 TRAV8-1A0A0A6YYK1 113 aa15.29■□□□□ 0.04
COL9A3-201ENST00000343916 M0QZK8 103 aa15.29■□□□□ 0.04
COL9A3-201ENST00000343916 BMPR1BO00238 502 aa15.29■□□□□ 0.04
COL9A3-201ENST00000343916 NDUFA3O95167 84 aa15.29■□□□□ 0.04
COL9A3-201ENST00000343916 TCRAP04437 139 aa15.29■□□□□ 0.04
COL9A3-201ENST00000343916 SRIP30626 198 aa15.29■□□□□ 0.04
COL9A3-201ENST00000343916 SLAQ13239 276 aa15.29■□□□□ 0.04
COL9A3-201ENST00000343916 NPBQ8NG41 125 aa15.29■□□□□ 0.04
COL9A3-201ENST00000343916 GPR82Q96P67 336 aa15.29■□□□□ 0.04
COL9A3-201ENST00000343916 RCHY1Q96PM5 261 aa15.29■□□□□ 0.04
COL9A3-201ENST00000343916 Q71RC1 249 aaPredicted RBP15.29■□□□□ 0.04
COL9A3-201ENST00000343916 NCBP2LA6PVI3 153 aaKnown RBP15.28■□□□□ 0.04
COL9A3-201ENST00000343916 HIGD1CA8MV81 97 aa15.28■□□□□ 0.04
COL9A3-201ENST00000343916 HLA-DQA1P01909 254 aa15.28■□□□□ 0.04
COL9A3-201ENST00000343916 NPSP0C0P6 89 aa15.28■□□□□ 0.04
COL9A3-201ENST00000343916 C5orf64Q2M2E5 130 aa15.28■□□□□ 0.04
COL9A3-201ENST00000343916 DTX2Q86UW9 622 aa15.28■□□□□ 0.04
COL9A3-201ENST00000343916 KIR3DL3Q8N743 410 aa15.28■□□□□ 0.04
COL9A3-201ENST00000343916 GRAMD2BQ96HH9 432 aa15.28■□□□□ 0.04
COL9A3-201ENST00000343916 PRORYQ9H606 182 aa15.28■□□□□ 0.04
COL9A3-201ENST00000343916 ZNF331Q9NQX6 463 aaPredicted RBP15.28■□□□□ 0.04
COL9A3-201ENST00000343916 MRPL27Q9P0M9 148 aaKnown RBP15.28■□□□□ 0.04
COL9A3-201ENST00000343916 TBL2Q9Y4P3 447 aaKnown RBP15.28■□□□□ 0.04
COL9A3-201ENST00000343916 VWC2LB2RUY7 222 aa15.28■□□□□ 0.04
COL9A3-201ENST00000343916 GPR6P46095 362 aaPredicted RBP15.28■□□□□ 0.04
COL9A3-201ENST00000343916 NDPQ00604 133 aa15.28■□□□□ 0.04
COL9A3-201ENST00000343916 C17orf77Q96MU5 243 aa15.28■□□□□ 0.04
COL9A3-201ENST00000343916 SRSF8Q9BRL6 282 aaKnown RBP15.28■□□□□ 0.04
COL9A3-201ENST00000343916 DLEU1O43261 78 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms