RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 JTBO76095 146 aa16.79■□□□□ 0.28
SDC3-202ENST00000339394 INSL3P51460 131 aa16.79■□□□□ 0.28
SDC3-202ENST00000339394 HSD17B11Q8NBQ5 300 aa16.79■□□□□ 0.28
SDC3-202ENST00000339394 MLXQ9UH92 298 aa16.79■□□□□ 0.28
SDC3-202ENST00000339394 RFNGQ9Y644 331 aa16.79■□□□□ 0.28
SDC3-202ENST00000339394 U3KQE9 123 aa16.79■□□□□ 0.28
SDC3-202ENST00000339394 IGHV3-66A0A0C4DH42 116 aa16.78■□□□□ 0.28
SDC3-202ENST00000339394 KANTRA0A1W2PQU2 76 aa16.78■□□□□ 0.28
SDC3-202ENST00000339394 CHEK1O14757 476 aa16.78■□□□□ 0.28
SDC3-202ENST00000339394 BCL2L11O43521 198 aa16.78■□□□□ 0.28
SDC3-202ENST00000339394 HYPMO75409 117 aa16.78■□□□□ 0.28
SDC3-202ENST00000339394 PXDC1Q5TGL8 231 aa16.78■□□□□ 0.28
SDC3-202ENST00000339394 SELENOKQ9Y6D0 94 aa16.78■□□□□ 0.28
SDC3-202ENST00000339394 MGAM2Q2M2H8 2515 aa16.78■□□□□ 0.28
SDC3-202ENST00000339394 OR5G3P0C626 314 aa16.77■□□□□ 0.28
SDC3-202ENST00000339394 NKX2-5P52952 324 aaPredicted RBP16.77■□□□□ 0.28
SDC3-202ENST00000339394 PATE2Q6UY27 113 aa16.77■□□□□ 0.28
SDC3-202ENST00000339394 C9orf62Q8N4C0 152 aa16.77■□□□□ 0.28
SDC3-202ENST00000339394 TMEM37Q8WXS4 190 aa16.77■□□□□ 0.28
SDC3-202ENST00000339394 ST8SIA2Q92186 375 aa16.77■□□□□ 0.28
SDC3-202ENST00000339394 VSIRQ9H7M9 311 aa16.77■□□□□ 0.28
SDC3-202ENST00000339394 KCNIP2Q9NS61 270 aa16.77■□□□□ 0.28
SDC3-202ENST00000339394 IGLV1-51P01701 117 aa16.77■□□□□ 0.27
SDC3-202ENST00000339394 ATP6V0CP27449 155 aa16.77■□□□□ 0.27
SDC3-202ENST00000339394 DEFB114Q30KQ6 69 aa16.77■□□□□ 0.27
SDC3-202ENST00000339394 LAMTOR1Q6IAA8 161 aa16.77■□□□□ 0.27
SDC3-202ENST00000339394 DYNLRB2Q8TF09 96 aa16.77■□□□□ 0.27
SDC3-202ENST00000339394 NARS2Q96I59 477 aaKnown RBP16.77■□□□□ 0.27
SDC3-202ENST00000339394 ARV1Q9H2C2 271 aa16.77■□□□□ 0.27
SDC3-202ENST00000339394 HIGD1AQ9Y241 93 aa16.77■□□□□ 0.27
SDC3-202ENST00000339394 A0A1W2PS18 150 aa16.76■□□□□ 0.27
SDC3-202ENST00000339394 BUB3O43684 328 aa16.76■□□□□ 0.27
SDC3-202ENST00000339394 UHRF2Q96PU4 802 aa16.76■□□□□ 0.27
SDC3-202ENST00000339394 RNF2Q99496 336 aa16.76■□□□□ 0.27
SDC3-202ENST00000339394 DNAJC4Q9NNZ3 241 aa16.76■□□□□ 0.27
SDC3-202ENST00000339394 TECRQ9NZ01 308 aaKnown RBP16.76■□□□□ 0.27
SDC3-202ENST00000339394 TIMM9Q9Y5J7 89 aa16.76■□□□□ 0.27
SDC3-202ENST00000339394 ELOA3CA0A087WX78 387 aaPredicted RBP16.75■□□□□ 0.27
SDC3-202ENST00000339394 WIPF1O43516 503 aa16.75■□□□□ 0.27
SDC3-202ENST00000339394 COX7A2P2O60397 106 aa16.75■□□□□ 0.27
SDC3-202ENST00000339394 CD300EQ496F6 205 aaPredicted RBP16.75■□□□□ 0.27
SDC3-202ENST00000339394 GCSAMLQ5JQS6 135 aa16.75■□□□□ 0.27
SDC3-202ENST00000339394 PPP1R14BQ96C90 147 aa16.75■□□□□ 0.27
SDC3-202ENST00000339394 ZNF471Q9BX82 626 aaPredicted RBP16.75■□□□□ 0.27
SDC3-202ENST00000339394 SLC25A39Q9BZJ4 359 aaPredicted RBP16.75■□□□□ 0.27
SDC3-202ENST00000339394 GPR61Q9BZJ8 451 aa16.75■□□□□ 0.27
SDC3-202ENST00000339394 SH3BGRL3Q9H299 93 aa16.75■□□□□ 0.27
SDC3-202ENST00000339394 PFDN2Q9UHV9 154 aa16.75■□□□□ 0.27
SDC3-202ENST00000339394 G3V4G9 280 aa16.74■□□□□ 0.27
SDC3-202ENST00000339394 BMI1P35226 326 aa16.74■□□□□ 0.27
SDC3-202ENST00000339394 FFAR4Q5NUL3 377 aa16.74■□□□□ 0.27
SDC3-202ENST00000339394 C10orf113Q5VZT2 155 aa16.74■□□□□ 0.27
SDC3-202ENST00000339394 OR1L4Q8NGR5 311 aa16.74■□□□□ 0.27
SDC3-202ENST00000339394 LINC00305Q7Z4B0 112 aa16.73■□□□□ 0.27
SDC3-202ENST00000339394 GNPNAT1Q96EK6 184 aaPredicted RBP16.73■□□□□ 0.27
SDC3-202ENST00000339394 PFDN5Q99471 154 aa16.73■□□□□ 0.27
SDC3-202ENST00000339394 PSMG3Q9BT73 122 aaPredicted RBP16.73■□□□□ 0.27
SDC3-202ENST00000339394 TMEM231Q9H6L2 316 aa16.73■□□□□ 0.27
SDC3-202ENST00000339394 ZNF98A6NK75 572 aa16.72■□□□□ 0.27
SDC3-202ENST00000339394 SAMD5Q5TGI4 173 aa16.72■□□□□ 0.27
SDC3-202ENST00000339394 C16orf54Q6UWD8 224 aa16.72■□□□□ 0.27
SDC3-202ENST00000339394 GATAD1Q8WUU5 269 aa16.72■□□□□ 0.27
SDC3-202ENST00000339394 GRAMD2BQ96HH9 432 aa16.72■□□□□ 0.27
SDC3-202ENST00000339394 SHANK2-AS3Q9BTD1 123 aa16.72■□□□□ 0.27
SDC3-202ENST00000339394 S100A7P31151 101 aa16.72■□□□□ 0.27
SDC3-202ENST00000339394 LEMD1Q68G75 181 aa16.72■□□□□ 0.27
SDC3-202ENST00000339394 S100A7AQ86SG5 101 aa16.72■□□□□ 0.27
SDC3-202ENST00000339394 OR2G3Q8NGZ4 309 aa16.72■□□□□ 0.27
SDC3-202ENST00000339394 SCRT1Q9BWW7 348 aa16.72■□□□□ 0.27
SDC3-202ENST00000339394 SLC25A32Q9H2D1 315 aa16.72■□□□□ 0.27
SDC3-202ENST00000339394 IZUMO1RA6ND01 250 aa16.71■□□□□ 0.27
SDC3-202ENST00000339394 H3BRN7 92 aa16.71■□□□□ 0.27
SDC3-202ENST00000339394 SERF2P84101 59 aa16.71■□□□□ 0.27
SDC3-202ENST00000339394 C1orf194Q5T5A4 169 aa16.71■□□□□ 0.27
SDC3-202ENST00000339394 TMEM61Q8N0U2 210 aa16.71■□□□□ 0.27
SDC3-202ENST00000339394 GLMPQ8WWB7 406 aa16.71■□□□□ 0.27
SDC3-202ENST00000339394 SLC25A22Q9H936 323 aa16.71■□□□□ 0.27
SDC3-202ENST00000339394 MORN5Q5VZ52 161 aa16.7■□□□□ 0.26
SDC3-202ENST00000339394 FAM90A2PQ658T7 463 aa16.7■□□□□ 0.26
SDC3-202ENST00000339394 RBPMS2Q6ZRY4 209 aaKnown RBP16.7■□□□□ 0.26
SDC3-202ENST00000339394 TCF24Q7RTU0 167 aa16.7■□□□□ 0.26
SDC3-202ENST00000339394 OR2K2Q8NGT1 345 aa16.7■□□□□ 0.26
SDC3-202ENST00000339394 SEPSECSQ9HD40 501 aaKnown RBP16.7■□□□□ 0.26
SDC3-202ENST00000339394 BOLA2-SMG1P6H3BVE0 249 aa16.69■□□□□ 0.26
SDC3-202ENST00000339394 SPP1P10451 314 aa16.69■□□□□ 0.26
SDC3-202ENST00000339394 FAM78BQ5VT40 261 aa16.69■□□□□ 0.26
SDC3-202ENST00000339394 OR8I2Q8N0Y5 310 aa16.69■□□□□ 0.26
SDC3-202ENST00000339394 CD5P06127 495 aa16.68■□□□□ 0.26
SDC3-202ENST00000339394 M6PRP20645 277 aa16.68■□□□□ 0.26
SDC3-202ENST00000339394 RPL11P62913 178 aaKnown RBP16.68■□□□□ 0.26
SDC3-202ENST00000339394 EIF5AP63241 154 aaKnown RBP16.68■□□□□ 0.26
SDC3-202ENST00000339394 BAP18Q8IXM2 172 aa16.68■□□□□ 0.26
SDC3-202ENST00000339394 STOML3Q8TAV4 291 aa16.68■□□□□ 0.26
SDC3-202ENST00000339394 BOLA1Q9Y3E2 137 aa16.68■□□□□ 0.26
SDC3-202ENST00000339394 IGKV3-7A0A075B6H7 116 aa16.68■□□□□ 0.26
SDC3-202ENST00000339394 TPT1P13693 172 aaKnown RBP16.68■□□□□ 0.26
SDC3-202ENST00000339394 C4BPBP20851 252 aa16.68■□□□□ 0.26
SDC3-202ENST00000339394 EGFEM1PQ0D2K5 195 aa16.68■□□□□ 0.26
SDC3-202ENST00000339394 ACOT6Q3I5F7 207 aaPredicted RBP16.68■□□□□ 0.26
SDC3-202ENST00000339394 LCN12Q6JVE5 192 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms