RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 MORN3Q6PF18 240 aaPredicted RBP5.32□□□□□ -1.56
VPS35-201ENST00000299138 DRAM1Q8N682 238 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 IGKV1-12A0A0C4DH73 117 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 A0A1W2PS18 150 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 hADV29S1A0JD25 119 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 TMEM238C9JI98 176 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 ZG16O60844 167 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 IGKV1D-12P01611 117 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 TCRAP04437 139 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 PEAR1Q5VY43 1037 aaPredicted RBP5.32□□□□□ -1.56
VPS35-201ENST00000299138 STPG3Q8N7X2 389 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 BMPERQ8N8U9 685 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 ZIC4Q8N9L1 334 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 MCRIP2Q9BUT9 160 aaKnown RBP5.32□□□□□ -1.56
VPS35-201ENST00000299138 NUP210LQ5VU65 1888 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 NPIPB5A8MRT5 1133 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 IGHV3-23P01764 117 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 SELLP14151 372 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 ATP5G3P48201 142 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 SRSF1Q07955 248 aaKnown RBP eCLIP5.32□□□□□ -1.56
VPS35-201ENST00000299138 IGHV3-49A0A0A0MS15 119 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 LINC01549A6NIU2 74 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 C21orf140B9A014 251 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 EFNA2O43921 213 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 HERV-K104P63124 156 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 WIPI1Q5MNZ9 446 aaPredicted RBP5.32□□□□□ -1.56
VPS35-201ENST00000299138 MORN5Q5VZ52 161 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 LCN12Q6JVE5 192 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 DOCK9Q9BZ29 2069 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 KNCNA6PVL3 124 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 RAMP3O60896 148 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 IL6RP08887 468 aaPredicted RBP5.31□□□□□ -1.56
VPS35-201ENST00000299138 CDKN1BP46527 198 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 MPLKIPQ8TAP9 179 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 IFI27L1Q96BM0 104 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 LTBP2Q14767 1821 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 CNTRLQ7Z7A1 2325 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 SCTP09683 121 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 C1QTNF4Q9BXJ3 329 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 UBL5Q9BZL1 73 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 LOC101059948A0A1B0GTJ6 334 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 DKK1O94907 266 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 DUX3Q96PT4 197 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 EGR2P11161 476 aaPredicted RBP5.31□□□□□ -1.56
VPS35-201ENST00000299138 ETDBQ3ZM63 59 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 C6orf15Q6UXA7 325 aaPredicted RBP5.31□□□□□ -1.56
VPS35-201ENST00000299138 IGHV1-45A0A0A0MS14 117 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 TRAV25A0A0B4J276 109 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 IGKV1-5P01602 117 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 LTBRP36941 435 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 NBL1P41271 181 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 DAD1P61803 113 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 ANKRD39Q53RE8 183 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 ABHD12Q8N2K0 398 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 POLR3KQ9Y2Y1 108 aaPredicted RBP5.31□□□□□ -1.56
VPS35-201ENST00000299138 F5P12259 2224 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 IGHG3P01860 377 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 CFHR2P36980 270 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 OSR1Q8TAX0 266 aaPredicted RBP5.31□□□□□ -1.56
VPS35-201ENST00000299138 SARAFQ96BY9 339 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 ZNF492Q9P255 531 aa5.31□□□□□ -1.56
VPS35-201ENST00000299138 TINCRA0A1B0GVN0 87 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 P0C879 139 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 PPIFP30405 207 aaKnown RBP5.3□□□□□ -1.56
VPS35-201ENST00000299138 KLF5Q13887 457 aaPredicted RBP5.3□□□□□ -1.56
VPS35-201ENST00000299138 ORMDL2Q53FV1 153 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 PILRBQ9UKJ0 227 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 IGLC2P0DOY2 106 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 IGLC3P0DOY3 106 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 ZFP36L1Q07352 338 aaKnown RBP5.3□□□□□ -1.56
VPS35-201ENST00000299138 PPDPFLQ8WWR9 84 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 PPBPP02775 128 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 KLHDC3Q9BQ90 382 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 IGHV2OR16-5A0A0B4J2B6 119 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 FAM90A27PA6NNH2 459 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 IQCF6A8MYZ5 107 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 CELA2BP08218 269 aaPredicted RBP5.3□□□□□ -1.56
VPS35-201ENST00000299138 C15orf53Q8NAA6 179 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 IGKV1-27A0A075B6S5 117 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 IGKV1D-13A0A0B4J2D9 117 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 TM4SF5O14894 197 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 IGKV1-13P0DP09 117 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 C3orf36Q3SXR2 165 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 S4R3C0 116 aa5.3□□□□□ -1.56
VPS35-201ENST00000299138 ADARB2-AS1A8MUL3 147 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 SHISA9B4DS77 424 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 AGFG2O95081 481 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 LEPROTO15243 131 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 CFHR1Q03591 330 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 DEFB109BQ30KR1 87 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 ARPC1AQ92747 370 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 TCF19Q9Y242 345 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 PF4P02776 101 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 GLMPQ8WWB7 406 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 OVOL2Q9BRP0 275 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 GFRALQ6UXV0 394 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 OBSL1O75147 1896 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 SIVA1O15304 175 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 IGHG2P01859 326 aa5.29□□□□□ -1.56
VPS35-201ENST00000299138 ZNF883P0CG24 379 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms