RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 IGFL4Q6B9Z1 124 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 GOLT1AQ6ZVE7 132 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 NEU1Q99519 415 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 JKAMPQ9P055 326 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 ITPR1Q14643 2758 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 TMSB15BA0A087X1C1 80 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 BMPR1BO00238 502 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 APCSP02743 223 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 TMEM136Q6ZRR5 245 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 NUP35Q8NFH5 326 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 FBXL7Q9UJT9 491 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 IGHV3OR16-13A0A075B7E8 117 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 IGHV3-74A0A0B4J1X5 117 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 LGALS7P47929 136 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 VKORC1Q9BQB6 163 aa13.26□□□□□ -0.29
VPS54-201ENST00000272322 TNFRSF13BO14836 293 aaPredicted RBP13.25□□□□□ -0.29
VPS54-201ENST00000272322 RNASEKQ6P5S7 137 aaKnown RBP13.25□□□□□ -0.29
VPS54-201ENST00000272322 MCRIP2Q9BUT9 160 aaKnown RBP13.25□□□□□ -0.29
VPS54-201ENST00000272322 M0R3E3 92 aa13.25□□□□□ -0.29
VPS54-201ENST00000272322 GDF5OSQ5U4N7 250 aa13.25□□□□□ -0.29
VPS54-201ENST00000272322 ZNF600Q6ZNG1 722 aa13.25□□□□□ -0.29
VPS54-201ENST00000272322 IGF2BP2-AS1Q96M15 143 aa13.25□□□□□ -0.29
VPS54-201ENST00000272322 RASL11BQ9BPW5 248 aa13.25□□□□□ -0.29
VPS54-201ENST00000272322 EPDR1Q9UM22 224 aa13.25□□□□□ -0.29
VPS54-201ENST00000272322 NOTCH3Q9UM47 2321 aa13.25□□□□□ -0.29
VPS54-201ENST00000272322 CSN3P07498 182 aa13.25□□□□□ -0.29
VPS54-201ENST00000272322 ZNF138P52744 262 aa13.25□□□□□ -0.29
VPS54-201ENST00000272322 MAJINQ3KP22 176 aa13.25□□□□□ -0.29
VPS54-201ENST00000272322 PERPQ96FX8 193 aa13.25□□□□□ -0.29
VPS54-201ENST00000272322 Q9H3A6 140 aa13.25□□□□□ -0.29
VPS54-201ENST00000272322 VWC2LB2RUY7 222 aa13.24□□□□□ -0.29
VPS54-201ENST00000272322 IGLV1-47P01700 117 aa13.24□□□□□ -0.29
VPS54-201ENST00000272322 MRPL32Q9BYC8 188 aaKnown RBP13.24□□□□□ -0.29
VPS54-201ENST00000272322 OSTCQ9NRP0 149 aa13.24□□□□□ -0.29
VPS54-201ENST00000272322 USP9XQ93008 2570 aaPredicted RBP13.24□□□□□ -0.29
VPS54-201ENST00000272322 IGHV3OR16-10A0A075B7F0 116 aa13.23□□□□□ -0.29
VPS54-201ENST00000272322 FCGR2BP31994 310 aaPredicted RBP13.23□□□□□ -0.29
VPS54-201ENST00000272322 COMPP49747 757 aaPredicted RBP13.23□□□□□ -0.29
VPS54-201ENST00000272322 OR8B3Q8NGG8 313 aa13.23□□□□□ -0.29
VPS54-201ENST00000272322 OR8B2Q96RD0 313 aa13.23□□□□□ -0.29
VPS54-201ENST00000272322 SETD2Q9BYW2 2564 aaPredicted RBP13.23□□□□□ -0.29
VPS54-201ENST00000272322 NRN1Q9NPD7 142 aa13.23□□□□□ -0.29
VPS54-201ENST00000272322 CFAP46Q8IYW2 2715 aa13.23□□□□□ -0.29
VPS54-201ENST00000272322 IL4P05112 153 aa13.23□□□□□ -0.29
VPS54-201ENST00000272322 DAZAP1Q96EP5 407 aaKnown RBP13.23□□□□□ -0.29
VPS54-201ENST00000272322 BRS3P32247 399 aa13.22□□□□□ -0.29
VPS54-201ENST00000272322 NDUFAF3Q9BU61 184 aa13.22□□□□□ -0.29
VPS54-201ENST00000272322 LRRK2Q5S007 2527 aa13.22□□□□□ -0.29
VPS54-201ENST00000272322 DIRC3C9JPN6 131 aa13.22□□□□□ -0.29
VPS54-201ENST00000272322 SELENOTP62341 195 aa13.22□□□□□ -0.29
VPS54-201ENST00000272322 CYB5R2Q6BCY4 276 aa13.22□□□□□ -0.29
VPS54-201ENST00000272322 SNHG12Q9BXW3 62 aa13.22□□□□□ -0.29
VPS54-201ENST00000272322 HIGD1AQ9Y241 93 aa13.22□□□□□ -0.29
VPS54-201ENST00000272322 A0A1W2PS18 150 aa13.22□□□□□ -0.29
VPS54-201ENST00000272322 AMY1AP04745 511 aa13.22□□□□□ -0.29
VPS54-201ENST00000272322 HTR1DP28221 377 aa13.22□□□□□ -0.29
VPS54-201ENST00000272322 RBM14Q96PK6 669 aaKnown RBP13.22□□□□□ -0.29
VPS54-201ENST00000272322 SELENOKQ9Y6D0 94 aa13.22□□□□□ -0.29
VPS54-201ENST00000272322 FNDC10F2Z333 226 aa13.21□□□□□ -0.29
VPS54-201ENST00000272322 VAMP8Q9BV40 100 aa13.21□□□□□ -0.29
VPS54-201ENST00000272322 C19orf24Q9BVV8 132 aa13.21□□□□□ -0.29
VPS54-201ENST00000272322 KAAG1Q9UBP8 84 aa13.21□□□□□ -0.29
VPS54-201ENST00000272322 TEX22C9J3V5 150 aa13.21□□□□□ -0.29
VPS54-201ENST00000272322 TP73-AS1Q9UF72 201 aa13.21□□□□□ -0.29
VPS54-201ENST00000272322 IGHV3-49A0A0A0MS15 119 aa13.21□□□□□ -0.3
VPS54-201ENST00000272322 IGHV3-66A0A0C4DH42 116 aa13.21□□□□□ -0.3
VPS54-201ENST00000272322 HSBP1O75506 76 aa13.21□□□□□ -0.3
VPS54-201ENST00000272322 TMEM30BQ3MIR4 351 aa13.21□□□□□ -0.3
VPS54-201ENST00000272322 Q56UQ5 140 aa13.21□□□□□ -0.3
VPS54-201ENST00000272322 LINC00311Q8N616 119 aa13.21□□□□□ -0.3
VPS54-201ENST00000272322 NOL4LQ96MY1 436 aaPredicted RBP13.21□□□□□ -0.3
VPS54-201ENST00000272322 GNB1LQ9BYB4 327 aa13.21□□□□□ -0.3
VPS54-201ENST00000272322 CLEC5AQ9NY25 188 aa13.21□□□□□ -0.3
VPS54-201ENST00000272322 F11RQ9Y624 299 aaKnown RBP13.21□□□□□ -0.3
VPS54-201ENST00000272322 SORL1Q92673 2214 aa13.2□□□□□ -0.3
VPS54-201ENST00000272322 GPX1P07203 203 aa13.2□□□□□ -0.3
VPS54-201ENST00000272322 COL8A1P27658 744 aa13.2□□□□□ -0.3
VPS54-201ENST00000272322 TEX45Q8NA69 505 aa13.2□□□□□ -0.3
VPS54-201ENST00000272322 ZNF586Q9NXT0 402 aa13.2□□□□□ -0.3
VPS54-201ENST00000272322 LIPFP07098 398 aa13.2□□□□□ -0.3
VPS54-201ENST00000272322 TCTAP57738 103 aa13.2□□□□□ -0.3
VPS54-201ENST00000272322 SLC25A39Q9BZJ4 359 aaPredicted RBP13.2□□□□□ -0.3
VPS54-201ENST00000272322 P01737 135 aa13.19□□□□□ -0.3
VPS54-201ENST00000272322 TFPI2P48307 235 aa13.19□□□□□ -0.3
VPS54-201ENST00000272322 ETFRF1Q6IPR1 90 aa13.19□□□□□ -0.3
VPS54-201ENST00000272322 DYNAPQ8N1N2 210 aa13.19□□□□□ -0.3
VPS54-201ENST00000272322 FSTL3O95633 263 aa13.19□□□□□ -0.3
VPS54-201ENST00000272322 IGLC1P0CG04 106 aa13.19□□□□□ -0.3
VPS54-201ENST00000272322 ADORA2A-AS1P86434 159 aa13.19□□□□□ -0.3
VPS54-201ENST00000272322 TPTE2P1Q5T6R2 138 aa13.19□□□□□ -0.3
VPS54-201ENST00000272322 IZUMO1RA6ND01 250 aa13.19□□□□□ -0.3
VPS54-201ENST00000272322 IGKV1-17P01599 117 aa13.19□□□□□ -0.3
VPS54-201ENST00000272322 ABCA12Q86UK0 2595 aa13.19□□□□□ -0.3
VPS54-201ENST00000272322 A0A1W2PPR1 153 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 OR2J3O76001 311 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 OR4A5Q8NH83 315 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 ZNF596Q8TC21 504 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 SMIM27A0A1W2PRY6 76 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 GNG7O60262 68 aa13.18□□□□□ -0.3
VPS54-201ENST00000272322 GPR82Q96P67 336 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms