RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 H3BRM9 83 aa8.82□□□□□ -1
CD44-201ENST00000263398 ORMDL2Q53FV1 153 aa8.82□□□□□ -1
CD44-201ENST00000263398 TMEM256Q8N2U0 113 aa8.82□□□□□ -1
CD44-201ENST00000263398 CD7P09564 240 aa8.82□□□□□ -1
CD44-201ENST00000263398 ZNF585BQ52M93 769 aa8.82□□□□□ -1
CD44-201ENST00000263398 TMEM101Q96IK0 257 aa8.82□□□□□ -1
CD44-201ENST00000263398 SLC25A39Q9BZJ4 359 aaPredicted RBP8.82□□□□□ -1
CD44-201ENST00000263398 CYSLTR1Q9Y271 337 aa8.82□□□□□ -1
CD44-201ENST00000263398 IGKV1D-17A0A075B6S4 117 aa8.82□□□□□ -1
CD44-201ENST00000263398 MBD3L4A6NDZ8 208 aaPredicted RBP8.82□□□□□ -1
CD44-201ENST00000263398 MBD3L3A6NE82 208 aaPredicted RBP8.82□□□□□ -1
CD44-201ENST00000263398 MBD3L5A6NJ08 208 aaPredicted RBP8.82□□□□□ -1
CD44-201ENST00000263398 IGHG3P01860 377 aa8.82□□□□□ -1
CD44-201ENST00000263398 PPIFP30405 207 aaKnown RBP8.82□□□□□ -1
CD44-201ENST00000263398 ACTL10Q5JWF8 245 aa8.82□□□□□ -1
CD44-201ENST00000263398 MBD3L2Q8NHZ7 208 aaPredicted RBP8.82□□□□□ -1
CD44-201ENST00000263398 ITLN2Q8WWU7 325 aaPredicted RBP8.82□□□□□ -1
CD44-201ENST00000263398 VOPP1Q96AW1 172 aa8.82□□□□□ -1
CD44-201ENST00000263398 MS4A6AQ9H2W1 248 aa8.82□□□□□ -1
CD44-201ENST00000263398 ANAPC10Q9UM13 185 aa8.82□□□□□ -1
CD44-201ENST00000263398 IGHV1-3A0A0C4DH29 117 aa8.81□□□□□ -1
CD44-201ENST00000263398 OOSP1A8MZH6 123 aa8.81□□□□□ -1
CD44-201ENST00000263398 FBLN7Q53RD9 439 aa8.81□□□□□ -1
CD44-201ENST00000263398 ZNF418Q8TF45 676 aaPredicted RBP8.81□□□□□ -1
CD44-201ENST00000263398 NHP2Q9NX24 153 aaKnown RBP8.81□□□□□ -1
CD44-201ENST00000263398 FNDC10F2Z333 226 aa8.81□□□□□ -1
CD44-201ENST00000263398 H0YJW9 148 aa8.81□□□□□ -1
CD44-201ENST00000263398 LINC01559Q495D7 138 aa8.81□□□□□ -1
CD44-201ENST00000263398 DOCK11Q5JSL3 2073 aa8.81□□□□□ -1
CD44-201ENST00000263398 BEND2Q8NDZ0 799 aa8.81□□□□□ -1
CD44-201ENST00000263398 OR13C6PQ8NH95 151 aa8.81□□□□□ -1
CD44-201ENST00000263398 SCRT1Q9BWW7 348 aa8.81□□□□□ -1
CD44-201ENST00000263398 NPFFR1Q9GZQ6 430 aa8.81□□□□□ -1
CD44-201ENST00000263398 ZFHX2Q9C0A1 2572 aaPredicted RBP8.81□□□□□ -1
CD44-201ENST00000263398 EXOC3-AS1Q8N2X6 119 aa8.81□□□□□ -1
CD44-201ENST00000263398 IGKV1-6A0A0C4DH72 117 aa8.81□□□□□ -1
CD44-201ENST00000263398 C9JQL5 133 aa8.81□□□□□ -1
CD44-201ENST00000263398 DUSP14O95147 198 aaKnown RBP8.81□□□□□ -1
CD44-201ENST00000263398 EMP1P54849 157 aa8.81□□□□□ -1
CD44-201ENST00000263398 PAX8Q06710 450 aa8.81□□□□□ -1
CD44-201ENST00000263398 ORAOV1Q8WV07 137 aa8.81□□□□□ -1
CD44-201ENST00000263398 VCX2Q9H322 139 aa8.81□□□□□ -1
CD44-201ENST00000263398 IFI27P40305 119 aaPredicted RBP8.8□□□□□ -1
CD44-201ENST00000263398 SEC11AP67812 179 aa8.8□□□□□ -1
CD44-201ENST00000263398 SPACA3Q8IXA5 215 aa8.8□□□□□ -1
CD44-201ENST00000263398 FAM169BQ8N8A8 192 aa8.8□□□□□ -1
CD44-201ENST00000263398 GLMPQ8WWB7 406 aa8.8□□□□□ -1
CD44-201ENST00000263398 LINC01549A6NIU2 74 aa8.8□□□□□ -1
CD44-201ENST00000263398 ITGB1BP1O14713 200 aa8.8□□□□□ -1
CD44-201ENST00000263398 OVOL1O14753 267 aa8.8□□□□□ -1
CD44-201ENST00000263398 TYMSP04818 313 aa8.8□□□□□ -1
CD44-201ENST00000263398 GZMBP10144 247 aa8.8□□□□□ -1
CD44-201ENST00000263398 LINC01587Q99440 93 aa8.8□□□□□ -1
CD44-201ENST00000263398 PF4P02776 101 aa8.8□□□□□ -1
CD44-201ENST00000263398 LINC00205P59089 165 aa8.8□□□□□ -1
CD44-201ENST00000263398 GAFA1Q96PS6 74 aa8.8□□□□□ -1
CD44-201ENST00000263398 HS3ST6Q96QI5 342 aa8.8□□□□□ -1
CD44-201ENST00000263398 ARFGEF3Q5TH69 2177 aa8.8□□□□□ -1
CD44-201ENST00000263398 NUP37Q8NFH4 326 aa8.8□□□□□ -1
CD44-201ENST00000263398 SMPXQ9UHP9 88 aa8.8□□□□□ -1
CD44-201ENST00000263398 RNASE2P10153 161 aaKnown RBP8.79□□□□□ -1
CD44-201ENST00000263398 C15orf32Q32M92 178 aa8.79□□□□□ -1
CD44-201ENST00000263398 TPTE2P1Q5T6R2 138 aa8.79□□□□□ -1
CD44-201ENST00000263398 OR2K2Q8NGT1 345 aa8.79□□□□□ -1
CD44-201ENST00000263398 PRSS22Q9GZN4 317 aa8.79□□□□□ -1
CD44-201ENST00000263398 PEMTQ9UBM1 199 aa8.79□□□□□ -1
CD44-201ENST00000263398 TMEM262E9PQX1 116 aa8.79□□□□□ -1
CD44-201ENST00000263398 RNASE1P07998 156 aaKnown RBP8.79□□□□□ -1
CD44-201ENST00000263398 MINOS1Q5TGZ0 78 aa8.79□□□□□ -1
CD44-201ENST00000263398 MRPL27Q9P0M9 148 aaKnown RBP8.79□□□□□ -1
CD44-201ENST00000263398 MINOS1-NBL1R4GNA1 71 aa8.79□□□□□ -1
CD44-201ENST00000263398 BRCA2P51587 3418 aa8.79□□□□□ -1
CD44-201ENST00000263398 A0A1B0GV72 72 aa8.79□□□□□ -1
CD44-201ENST00000263398 IGKCP01834 107 aa8.79□□□□□ -1
CD44-201ENST00000263398 WNT2P09544 360 aa8.79□□□□□ -1
CD44-201ENST00000263398 HSD52Q0P140 79 aa8.79□□□□□ -1
CD44-201ENST00000263398 NUP35Q8NFH5 326 aa8.79□□□□□ -1
CD44-201ENST00000263398 SIGLEC9Q9Y336 463 aa8.79□□□□□ -1
CD44-201ENST00000263398 LMO1P25800 156 aa8.78□□□□□ -1
CD44-201ENST00000263398 C5orf64Q2M2E5 130 aa8.78□□□□□ -1
CD44-201ENST00000263398 LHFPL4Q7Z7J7 247 aa8.78□□□□□ -1
CD44-201ENST00000263398 OR9G4Q8NGQ1 327 aa8.78□□□□□ -1
CD44-201ENST00000263398 EVI2AP22794 236 aa8.78□□□□□ -1
CD44-201ENST00000263398 LYPD1Q8N2G4 141 aa8.78□□□□□ -1
CD44-201ENST00000263398 JMJD8Q96S16 334 aa8.78□□□□□ -1
CD44-201ENST00000263398 FRMPD3Q5JV73 1810 aa8.78□□□□□ -1
CD44-201ENST00000263398 TRAV41A0A0B4J266 112 aa8.78□□□□□ -1
CD44-201ENST00000263398 C3orf79P0CE67 100 aa8.78□□□□□ -1
CD44-201ENST00000263398 LDLRAD2Q5SZI1 272 aa8.78□□□□□ -1
CD44-201ENST00000263398 Q6ZS92 163 aa8.78□□□□□ -1
CD44-201ENST00000263398 KIR3DL3Q8N743 410 aa8.78□□□□□ -1
CD44-201ENST00000263398 IGKV2-40A0A087WW87 121 aaPredicted RBP8.78□□□□□ -1
CD44-201ENST00000263398 IGKV2D-40P01614 121 aaPredicted RBP8.78□□□□□ -1
CD44-201ENST00000263398 SIGLEC15Q6ZMC9 328 aa8.78□□□□□ -1
CD44-201ENST00000263398 VMO1Q7Z5L0 202 aa8.78□□□□□ -1
CD44-201ENST00000263398 OR5A1Q8NGJ0 315 aa8.78□□□□□ -1
CD44-201ENST00000263398 FNDC4Q9H6D8 234 aaPredicted RBP8.78□□□□□ -1
CD44-201ENST00000263398 D6R8Y8 96 aa8.77□□□□□ -1.01
CD44-201ENST00000263398 MKI67P46013 3256 aaKnown RBP8.77□□□□□ -1.01
CD44-201ENST00000263398 PLXNA4Q9HCM2 1894 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms