RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 IBA57Q5T440 356 aaKnown RBP9.21□□□□□ -0.93
VPS4A-201ENST00000254950 EBLN2Q6P2I7 272 aa9.21□□□□□ -0.93
VPS4A-201ENST00000254950 SCRT1Q9BWW7 348 aa9.21□□□□□ -0.93
VPS4A-201ENST00000254950 NAT8BQ9UHF3 227 aa9.21□□□□□ -0.93
VPS4A-201ENST00000254950 A8MWL6 223 aa9.21□□□□□ -0.93
VPS4A-201ENST00000254950 SEC14L6B5MCN3 397 aa9.21□□□□□ -0.93
VPS4A-201ENST00000254950 IGHV4-59P01825 116 aa9.21□□□□□ -0.93
VPS4A-201ENST00000254950 C1orf229Q6ZS94 237 aaPredicted RBP9.21□□□□□ -0.93
VPS4A-201ENST00000254950 OTORQ9NRC9 128 aa9.21□□□□□ -0.93
VPS4A-201ENST00000254950 UFC1Q9Y3C8 167 aa9.21□□□□□ -0.93
VPS4A-201ENST00000254950 TRAPPC1Q9Y5R8 145 aa9.21□□□□□ -0.93
VPS4A-201ENST00000254950 DMDP11532 3685 aa9.21□□□□□ -0.93
VPS4A-201ENST00000254950 SERTM2A0A1B0GWG4 89 aa9.21□□□□□ -0.94
VPS4A-201ENST00000254950 TMEM116Q8NCL8 245 aa9.21□□□□□ -0.94
VPS4A-201ENST00000254950 FNDC4Q9H6D8 234 aaPredicted RBP9.21□□□□□ -0.94
VPS4A-201ENST00000254950 J3KRW8 73 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 ZNF98A6NK75 572 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 TAS2R60P59551 318 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 YPEL3P61236 119 aaPredicted RBP9.2□□□□□ -0.94
VPS4A-201ENST00000254950 WDR73Q6P4I2 378 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 Q8N9W7 124 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 TMEM37Q8WXS4 190 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 TRAV34A0A0B4J273 112 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 TTC9CQ8N5M4 171 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 TCEAL7Q9BRU2 100 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 SLC50A1Q9BRV3 221 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 ATMQ13315 3056 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 IGHV7-81A0A0B4J1V7 117 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 CGB1A6NKQ9 187 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 NDUFA3O95167 84 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 RAB5AP20339 215 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 CAMPP49913 170 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 VWC2Q2TAL6 325 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 NHLRC2Q8NBF2 726 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 VPREB3Q9UKI3 123 aa9.2□□□□□ -0.94
VPS4A-201ENST00000254950 SNRPD3P62318 126 aaKnown RBP9.19□□□□□ -0.94
VPS4A-201ENST00000254950 SAPCD1Q5SSQ6 148 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 IL17RELQ6ZVW7 336 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 TMEM208Q9BTX3 173 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 TLN2Q9Y4G6 2542 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 INS-IGF2F8WCM5 200 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 S100A12P80511 92 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 PRSS57Q6UWY2 283 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 NOL4LQ96MY1 436 aaPredicted RBP9.19□□□□□ -0.94
VPS4A-201ENST00000254950 C11orf1Q9H5F2 150 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 SDF2L1Q9HCN8 221 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 EPDR1Q9UM22 224 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 TMSB15BA0A087X1C1 80 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 A0A1W2PRX2 142 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 CXorf65A6NEN9 183 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 PMS2P5A8MQ11 134 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 PF4P02776 101 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 SAMD13Q5VXD3 122 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 PEMTQ9UBM1 199 aa9.19□□□□□ -0.94
VPS4A-201ENST00000254950 HOXA3O43365 443 aaPredicted RBP9.18□□□□□ -0.94
VPS4A-201ENST00000254950 MRPL54Q6P161 138 aaKnown RBP9.18□□□□□ -0.94
VPS4A-201ENST00000254950 C11orf42Q8N5U0 333 aa9.18□□□□□ -0.94
VPS4A-201ENST00000254950 C11orf44Q8N8P7 122 aa9.18□□□□□ -0.94
VPS4A-201ENST00000254950 THAP8Q8NA92 274 aa9.18□□□□□ -0.94
VPS4A-201ENST00000254950 ATG101Q9BSB4 218 aa9.18□□□□□ -0.94
VPS4A-201ENST00000254950 PRRC2AP48634 2157 aaKnown RBP9.18□□□□□ -0.94
VPS4A-201ENST00000254950 NOTCH3Q9UM47 2321 aa9.18□□□□□ -0.94
VPS4A-201ENST00000254950 IGLC1P0CG04 106 aa9.18□□□□□ -0.94
VPS4A-201ENST00000254950 ZNF114Q8NC26 417 aa9.18□□□□□ -0.94
VPS4A-201ENST00000254950 SONP18583 2426 aaKnown RBP9.18□□□□□ -0.94
VPS4A-201ENST00000254950 RIGQ13278 110 aa9.18□□□□□ -0.94
VPS4A-201ENST00000254950 ATRAIDQ6UW56 229 aa9.18□□□□□ -0.94
VPS4A-201ENST00000254950 SIGLECL1Q8N7X8 197 aa9.18□□□□□ -0.94
VPS4A-201ENST00000254950 SFRP2Q96HF1 295 aa9.18□□□□□ -0.94
VPS4A-201ENST00000254950 RPL15P61313 204 aaKnown RBP9.17□□□□□ -0.94
VPS4A-201ENST00000254950 PRR20EP86478 221 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 PRR20CP86479 221 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 PRR20DP86480 221 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 PRR20BP86481 221 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 PRR20AP86496 221 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 HIST2H2BCQ6DN03 193 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 PIP4P2Q8N4L2 257 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 PEF1Q9UBV8 284 aaKnown RBP9.17□□□□□ -0.94
VPS4A-201ENST00000254950 LSM4Q9Y4Z0 139 aaKnown RBP9.17□□□□□ -0.94
VPS4A-201ENST00000254950 PLXNB1O43157 2135 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 AARDQ4LEZ3 155 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 TMEM190Q8WZ59 177 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 SHANK2-AS3Q9BTD1 123 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 TMEM189A5PLL7 270 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 SMIM17P0DL12 118 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 MFAP2P55001 183 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 FAM162BQ5T6X4 162 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 OR4B1Q8NGF8 309 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 CFHR4Q92496 578 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 FMC1Q96HJ9 113 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 ARL2-SNX15V9GYD0 113 aa9.17□□□□□ -0.94
VPS4A-201ENST00000254950 MAP1AP78559 2803 aaPredicted RBP9.17□□□□□ -0.94
VPS4A-201ENST00000254950 FBLL1A6NHQ2 334 aaKnown RBP9.16□□□□□ -0.94
VPS4A-201ENST00000254950 LY6LH3BQJ8 138 aa9.16□□□□□ -0.94
VPS4A-201ENST00000254950 RPL23P62829 140 aaKnown RBP9.16□□□□□ -0.94
VPS4A-201ENST00000254950 GNG5P63218 68 aa9.16□□□□□ -0.94
VPS4A-201ENST00000254950 HIST1H1AQ02539 215 aaPredicted RBP9.16□□□□□ -0.94
VPS4A-201ENST00000254950 C5orf56Q8N8D9 126 aa9.16□□□□□ -0.94
VPS4A-201ENST00000254950 TEX22C9J3V5 150 aa9.16□□□□□ -0.94
VPS4A-201ENST00000254950 E7EUB6 86 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms