RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 GAMTQ14353 236 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 ZNF79Q15937 498 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 ETFRF1Q6IPR1 90 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 LINC00299Q6ZSB3 139 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 TRPT1Q86TN4 253 aaKnown RBP7.5□□□□□ -1.21
SCN1A-222ENST00000642141 NOXA1Q86UR1 476 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 TRIM63Q969Q1 353 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 RAB40CQ96S21 281 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 U3KQ87 197 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 V9GYH0 126 aa7.5□□□□□ -1.21
SCN1A-222ENST00000642141 HELTA6NFD8 242 aa7.49□□□□□ -1.21
SCN1A-222ENST00000642141 FAM90A26D6RGX4 464 aa7.49□□□□□ -1.21
SCN1A-222ENST00000642141 DEDDO75618 318 aa7.49□□□□□ -1.21
SCN1A-222ENST00000642141 TOMM40O96008 361 aa7.49□□□□□ -1.21
SCN1A-222ENST00000642141 IGKV3-20P01619 116 aa7.49□□□□□ -1.21
SCN1A-222ENST00000642141 HOXB5P09067 269 aa7.49□□□□□ -1.21
SCN1A-222ENST00000642141 RBMY1A1P0DJD3 496 aaKnown RBP7.49□□□□□ -1.21
SCN1A-222ENST00000642141 RBMY1CP0DJD4 496 aa7.49□□□□□ -1.21
SCN1A-222ENST00000642141 S100A5P33763 92 aa7.49□□□□□ -1.21
SCN1A-222ENST00000642141 FAUP35544 74 aaKnown RBP7.49□□□□□ -1.21
SCN1A-222ENST00000642141 EIF2B2P49770 351 aaKnown RBP7.49□□□□□ -1.21
SCN1A-222ENST00000642141 AP3S2P59780 193 aa7.49□□□□□ -1.21
SCN1A-222ENST00000642141 SRPXP78539 464 aa7.49□□□□□ -1.21
SCN1A-222ENST00000642141 RBMY1FQ15415 496 aaKnown RBP7.49□□□□□ -1.21
SCN1A-222ENST00000642141 RPP25LQ8N5L8 163 aaKnown RBP7.49□□□□□ -1.21
SCN1A-222ENST00000642141 AGRNO00468 2067 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 IGKV1D-37A0A075B6S9 117 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 IGHV4-28A0A0C4DH34 117 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 WRBO00258 174 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 BUB3O43684 328 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 ATF4P18848 351 aaPredicted RBP7.48□□□□□ -1.21
SCN1A-222ENST00000642141 FXYD7P58549 80 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 LYZP61626 148 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 PPP1R1AQ13522 171 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 TMEM128Q5BJH2 165 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 SIGLEC15Q6ZMC9 328 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 Q8NAQ8 132 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 RNF125Q96EQ8 232 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 SLC35E1Q96K37 410 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 LINC00052Q96N35 136 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 RBM38Q9H0Z9 239 aaKnown RBP7.48□□□□□ -1.21
SCN1A-222ENST00000642141 XCL2Q9UBD3 114 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 CACFD1Q9UGQ2 172 aa7.48□□□□□ -1.21
SCN1A-222ENST00000642141 PITX3O75364 302 aa7.47□□□□□ -1.21
SCN1A-222ENST00000642141 GPX4P36969 197 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-222ENST00000642141 AP2S1P53680 142 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-222ENST00000642141 SNRPD3P62318 126 aaKnown RBP7.47□□□□□ -1.21
SCN1A-222ENST00000642141 ZNF767PQ75MW2 155 aa7.47□□□□□ -1.21
SCN1A-222ENST00000642141 CCDC190Q86UF4 302 aa7.47□□□□□ -1.21
SCN1A-222ENST00000642141 WDR12Q9GZL7 423 aaKnown RBP7.47□□□□□ -1.21
SCN1A-222ENST00000642141 C11orf68Q9H3H3 251 aaKnown RBP7.47□□□□□ -1.21
SCN1A-222ENST00000642141 NRN1Q9NPD7 142 aa7.47□□□□□ -1.21
SCN1A-222ENST00000642141 FLVCR2Q9UPI3 526 aa7.47□□□□□ -1.21
SCN1A-222ENST00000642141 BIRC6Q9NR09 4857 aa7.46□□□□□ -1.21
SCN1A-222ENST00000642141 SNRPGP15A8MWD9 76 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 IGLL5B9A064 214 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 H3BP45 60 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 SFT2D2O95562 160 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 SPP1P10451 314 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 INPP1P49441 399 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 RAB11AP62491 216 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 BAK1Q16611 211 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 SPANXN5Q5MJ07 72 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 GDF5OSQ5U4N7 250 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 MORN3Q6PF18 240 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-222ENST00000642141 CENPSQ8N2Z9 138 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 SLC25A21Q9BQT8 299 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-222ENST00000642141 MFFQ9GZY8 342 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 TBC1D24Q9ULP9 559 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 X6R8D5 127 aa7.46□□□□□ -1.22
SCN1A-222ENST00000642141 KMT2AQ03164 3969 aa7.45□□□□□ -1.22
SCN1A-222ENST00000642141 IGHV3OR16-12A0A075B7B8 117 aa7.45□□□□□ -1.22
SCN1A-222ENST00000642141 IGKV1OR2-108A0A075B7D4 117 aa7.45□□□□□ -1.22
SCN1A-222ENST00000642141 ELOA3CA0A087WX78 387 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-222ENST00000642141 H3BMM0 161 aa7.45□□□□□ -1.22
SCN1A-222ENST00000642141 SYNGR2O43760 224 aa7.45□□□□□ -1.22
SCN1A-222ENST00000642141 ADAP1O75689 374 aa7.45□□□□□ -1.22
SCN1A-222ENST00000642141 GATA2P23769 480 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-222ENST00000642141 HLA-DMBP28068 263 aa7.45□□□□□ -1.22
SCN1A-222ENST00000642141 SPANXN2Q5MJ10 180 aa7.45□□□□□ -1.22
SCN1A-222ENST00000642141 GGNBP1Q5YKI7 109 aa7.45□□□□□ -1.22
SCN1A-222ENST00000642141 LRTM2Q8N967 370 aa7.45□□□□□ -1.22
SCN1A-222ENST00000642141 CSNK1G2-AS1Q8NCQ2 148 aa7.45□□□□□ -1.22
SCN1A-222ENST00000642141 C2CD4CQ8TF44 421 aa7.45□□□□□ -1.22
SCN1A-222ENST00000642141 SRRQ9GZT4 340 aa7.45□□□□□ -1.22
SCN1A-222ENST00000642141 DUXBA0A1W2PPF3 345 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 F6UB75 175 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 MED6O75586 246 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 ORM2P19652 201 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 EMP1P54849 157 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 ATP5IP56385 69 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-222ENST00000642141 POLR2GP62487 172 aaKnown RBP eCLIP7.44□□□□□ -1.22
SCN1A-222ENST00000642141 PRR20EP86478 221 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 PRR20CP86479 221 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 PRR20DP86480 221 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 PRR20BP86481 221 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 PRR20AP86496 221 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 TRIQKQ629K1 86 aa7.44□□□□□ -1.22
SCN1A-222ENST00000642141 TMEM182Q6ZP80 229 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-222ENST00000642141 Q6ZTC4 211 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms