RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 FOXI2Q6ZQN5 318 aa10.64□□□□□ -0.71
SYNE2-228ENST00000639659 OR13C8Q8NGS7 320 aa10.64□□□□□ -0.71
SYNE2-228ENST00000639659 RNASEH2CQ8TDP1 164 aaKnown RBP10.64□□□□□ -0.71
SYNE2-228ENST00000639659 PPP1R14BQ96C90 147 aa10.64□□□□□ -0.71
SYNE2-228ENST00000639659 TMEM208Q9BTX3 173 aa10.64□□□□□ -0.71
SYNE2-228ENST00000639659 MAGT1Q9H0U3 335 aa10.64□□□□□ -0.71
SYNE2-228ENST00000639659 SAV1Q9H4B6 383 aaPredicted RBP10.64□□□□□ -0.71
SYNE2-228ENST00000639659 SEPSECSQ9HD40 501 aaKnown RBP10.64□□□□□ -0.71
SYNE2-228ENST00000639659 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.64□□□□□ -0.71
SYNE2-228ENST00000639659 KLK11Q9UBX7 282 aa10.64□□□□□ -0.71
SYNE2-228ENST00000639659 F6UB75 175 aa10.63□□□□□ -0.71
SYNE2-228ENST00000639659 TNFAIP8O95379 198 aa10.63□□□□□ -0.71
SYNE2-228ENST00000639659 OR5AC1P0C628 307 aa10.63□□□□□ -0.71
SYNE2-228ENST00000639659 PSG1P11464 419 aa10.63□□□□□ -0.71
SYNE2-228ENST00000639659 ELK1P19419 428 aa10.63□□□□□ -0.71
SYNE2-228ENST00000639659 UCP1P25874 307 aa10.63□□□□□ -0.71
SYNE2-228ENST00000639659 MEF2DQ14814 521 aa10.63□□□□□ -0.71
SYNE2-228ENST00000639659 RRN3P1Q2M238 152 aa10.63□□□□□ -0.71
SYNE2-228ENST00000639659 LHFPL1Q86WI0 220 aa10.63□□□□□ -0.71
SYNE2-228ENST00000639659 ZNF709Q8N972 641 aa10.63□□□□□ -0.71
SYNE2-228ENST00000639659 ZFAND1Q8TCF1 268 aa10.63□□□□□ -0.71
SYNE2-228ENST00000639659 MARCH1Q8TCQ1 289 aa10.63□□□□□ -0.71
SYNE2-228ENST00000639659 RNF125Q96EQ8 232 aa10.63□□□□□ -0.71
SYNE2-228ENST00000639659 TEX13DA0A0J9YY54 714 aaPredicted RBP10.62□□□□□ -0.71
SYNE2-228ENST00000639659 NUP62P37198 522 aaPredicted RBP10.62□□□□□ -0.71
SYNE2-228ENST00000639659 LYZP61626 148 aa10.62□□□□□ -0.71
SYNE2-228ENST00000639659 PSG9Q00887 426 aa10.62□□□□□ -0.71
SYNE2-228ENST00000639659 EBLN2Q6P2I7 272 aa10.62□□□□□ -0.71
SYNE2-228ENST00000639659 ARRDC1Q8N5I2 433 aa10.62□□□□□ -0.71
SYNE2-228ENST00000639659 OR4D10Q8NGI6 311 aa10.62□□□□□ -0.71
SYNE2-228ENST00000639659 ZFP92A6NM28 416 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 CDK2AP2O75956 126 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 ATP6V1G2O95670 118 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 NUDT3O95989 172 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 PSMB3P49720 205 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 FAM78BQ5VT40 261 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 TMEM268Q5VZI3 342 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 FAM219AQ8IW50 185 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 C1orf158Q8N1D5 194 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 OR52E5Q8NH55 327 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 OR52I2Q8NH67 350 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 LHFPL5Q8TAF8 219 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 TMEM170AQ8WVE7 144 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 GPR146Q96CH1 333 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 YIPF6Q96EC8 236 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 TMEM222Q9H0R3 208 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 PFDN2Q9UHV9 154 aa10.61□□□□□ -0.71
SYNE2-228ENST00000639659 C14orf166Q9Y224 244 aaKnown RBP10.61□□□□□ -0.71
SYNE2-228ENST00000639659 DEFB130BP0DP73 79 aa10.6□□□□□ -0.71
SYNE2-228ENST00000639659 DEFB130AP0DP74 79 aa10.6□□□□□ -0.71
SYNE2-228ENST00000639659 NCS1P62166 190 aa10.6□□□□□ -0.71
SYNE2-228ENST00000639659 OXA1LQ15070 435 aa10.6□□□□□ -0.71
SYNE2-228ENST00000639659 FAAP20Q6NZ36 180 aa10.6□□□□□ -0.71
SYNE2-228ENST00000639659 C6orf223Q8N319 242 aa10.6□□□□□ -0.71
SYNE2-228ENST00000639659 C15orf53Q8NAA6 179 aa10.6□□□□□ -0.71
SYNE2-228ENST00000639659 RBPMSQ93062 196 aaKnown RBP10.6□□□□□ -0.71
SYNE2-228ENST00000639659 VCX3AQ9NNX9 186 aa10.6□□□□□ -0.71
SYNE2-228ENST00000639659 NBDYA0A0U1RRE5 68 aa10.59□□□□□ -0.71
SYNE2-228ENST00000639659 RAB3DO95716 219 aa10.59□□□□□ -0.71
SYNE2-228ENST00000639659 PRM2P04554 102 aa10.59□□□□□ -0.71
SYNE2-228ENST00000639659 VBP1P61758 197 aa10.59□□□□□ -0.71
SYNE2-228ENST00000639659 ZNF90Q03938 601 aa10.59□□□□□ -0.71
SYNE2-228ENST00000639659 OR2F1Q13607 317 aa10.59□□□□□ -0.71
SYNE2-228ENST00000639659 ZNF79Q15937 498 aa10.59□□□□□ -0.71
SYNE2-228ENST00000639659 NOXA1Q86UR1 476 aa10.59□□□□□ -0.71
SYNE2-228ENST00000639659 SELENOHQ8IZQ5 122 aaKnown RBP10.59□□□□□ -0.71
SYNE2-228ENST00000639659 TERB2Q8NHR7 220 aa10.59□□□□□ -0.71
SYNE2-228ENST00000639659 NAA60Q9H7X0 242 aa10.59□□□□□ -0.71
SYNE2-228ENST00000639659 ZNF705GA8MUZ8 300 aaPredicted RBP10.58□□□□□ -0.72
SYNE2-228ENST00000639659 F5H768 121 aa10.58□□□□□ -0.72
SYNE2-228ENST00000639659 B3GALNT1O75752 331 aa10.58□□□□□ -0.72
SYNE2-228ENST00000639659 CDS2O95674 445 aa10.58□□□□□ -0.72
SYNE2-228ENST00000639659 SUPT4H1P63272 117 aaKnown RBP10.58□□□□□ -0.72
SYNE2-228ENST00000639659 KLF9Q13886 244 aaPredicted RBP10.58□□□□□ -0.72
SYNE2-228ENST00000639659 OR8G2PQ6IF36 304 aa10.58□□□□□ -0.72
SYNE2-228ENST00000639659 OR8I2Q8N0Y5 310 aa10.58□□□□□ -0.72
SYNE2-228ENST00000639659 SLC35E1Q96K37 410 aa10.58□□□□□ -0.72
SYNE2-228ENST00000639659 C16orf92Q96LL3 132 aa10.58□□□□□ -0.72
SYNE2-228ENST00000639659 SCRT2Q9NQ03 307 aa10.58□□□□□ -0.72
SYNE2-228ENST00000639659 PRR13Q9NZ81 148 aa10.58□□□□□ -0.72
SYNE2-228ENST00000639659 EXTL2Q9UBQ6 330 aa10.58□□□□□ -0.72
SYNE2-228ENST00000639659 A0A0J9YX75 114 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 SOCS3O14543 225 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 SULT1A3P0DMM9 295 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 SULT1A4P0DMN0 295 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 TBPP20226 339 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 FAM3BP58499 235 aaPredicted RBP10.57□□□□□ -0.72
SYNE2-228ENST00000639659 TAS2R19P59542 299 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 AARDQ4LEZ3 155 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 NMSQ5H8A3 153 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 SPATA31B1PQ5VZV4 182 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 GLYATL2Q8WU03 294 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 C20orf173Q96LM9 149 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 SLC25A22Q9H936 323 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 RPRMQ9NS64 109 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 DOK5Q9P104 306 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 MTFP1Q9UDX5 166 aa10.57□□□□□ -0.72
SYNE2-228ENST00000639659 PAIP2BQ9ULR5 123 aaKnown RBP10.57□□□□□ -0.72
SYNE2-228ENST00000639659 M0R2Z0 102 aa10.56□□□□□ -0.72
SYNE2-228ENST00000639659 ISLRO14498 428 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms