RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 LCN2P80188 198 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 C10orf113Q5VZT2 155 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 LINC00305Q7Z4B0 112 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 BLNKQ8WV28 456 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 SRSF12Q8WXF0 261 aaKnown RBP8.48□□□□□ -1.05
CUX1-221ENST00000622516 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.47□□□□□ -1.053e-7■■■■■ 26.8
CUX1-221ENST00000622516 LY6LH3BQJ8 138 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 PPP1R2P9O14990 202 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 FABP4P15090 132 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 ATP5IP56385 69 aaPredicted RBP8.47□□□□□ -1.05
CUX1-221ENST00000622516 CENPWQ5EE01 88 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 TEX38Q6PEX7 206 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 DYNAPQ8N1N2 210 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 LY6G5BQ8NDX9 201 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 RNASE7Q9H1E1 156 aaKnown RBP8.47□□□□□ -1.05
CUX1-221ENST00000622516 SRD5A3Q9H8P0 318 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 TEX22C9J3V5 150 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 DLEU1O43261 78 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 TAS2R45P59539 299 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 FXYD3Q14802 87 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 PYGO2Q9BRQ0 406 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 PRORYQ9H606 182 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 LPAR2Q9HBW0 351 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 TMEM167BQ9NRX6 74 aa8.47□□□□□ -1.05
CUX1-221ENST00000622516 TRAV34A0A0B4J273 112 aa8.46□□□□□ -1.05
CUX1-221ENST00000622516 INS-IGF2F8WCM5 200 aa8.46□□□□□ -1.05
CUX1-221ENST00000622516 ERVFC1-1P60608 527 aa8.46□□□□□ -1.05
CUX1-221ENST00000622516 RANP62826 216 aaKnown RBP8.46□□□□□ -1.05
CUX1-221ENST00000622516 SLC35B1P78383 322 aa8.46□□□□□ -1.05
CUX1-221ENST00000622516 GAGE1Q13065 139 aa8.46□□□□□ -1.05
CUX1-221ENST00000622516 TPTE2P1Q5T6R2 138 aa8.46□□□□□ -1.05
CUX1-221ENST00000622516 OR10G8Q8NGN5 311 aa8.46□□□□□ -1.05
CUX1-221ENST00000622516 C8orf46Q8TAG6 207 aa8.46□□□□□ -1.05
CUX1-221ENST00000622516 CHODLQ9H9P2 273 aa8.46□□□□□ -1.05
CUX1-221ENST00000622516 DPM3Q9P2X0 92 aa8.46□□□□□ -1.05
CUX1-221ENST00000622516 A0A1B0GUS0 222 aa8.46□□□□□ -1.06
CUX1-221ENST00000622516 GPR6P46095 362 aaPredicted RBP8.46□□□□□ -1.06
CUX1-221ENST00000622516 GNG4P50150 75 aa8.46□□□□□ -1.06
CUX1-221ENST00000622516 KIR3DL3Q8N743 410 aa8.46□□□□□ -1.06
CUX1-221ENST00000622516 EAF1Q96JC9 268 aaPredicted RBP8.46□□□□□ -1.06
CUX1-221ENST00000622516 ATG101Q9BSB4 218 aa8.46□□□□□ -1.06
CUX1-221ENST00000622516 PAXXQ9BUH6 204 aa8.46□□□□□ -1.06
CUX1-221ENST00000622516 MGST1P10620 155 aaKnown RBP8.46□□□□□ -1.06
CUX1-221ENST00000622516 KCNIP4Q6PIL6 250 aa8.46□□□□□ -1.06
CUX1-221ENST00000622516 HIST3H2BBQ8N257 126 aa8.46□□□□□ -1.06
CUX1-221ENST00000622516 ITLN2Q8WWU7 325 aaPredicted RBP8.46□□□□□ -1.06
CUX1-221ENST00000622516 TXNDC17Q9BRA2 123 aa8.46□□□□□ -1.06
CUX1-221ENST00000622516 WNT10AQ9GZT5 417 aa8.46□□□□□ -1.06
CUX1-221ENST00000622516 LRRK2Q5S007 2527 aa8.46□□□□□ -1.06
CUX1-221ENST00000622516 USP9YO00507 2555 aaPredicted RBP8.45□□□□□ -1.06
CUX1-221ENST00000622516 NCBP2LA6PVI3 153 aaKnown RBP8.45□□□□□ -1.06
CUX1-221ENST00000622516 GGCTO75223 188 aaKnown RBP8.45□□□□□ -1.06
CUX1-221ENST00000622516 NPSP0C0P6 89 aa8.45□□□□□ -1.06
CUX1-221ENST00000622516 CDKN1BP46527 198 aa8.45□□□□□ -1.06
CUX1-221ENST00000622516 GNG5P63218 68 aa8.45□□□□□ -1.06
CUX1-221ENST00000622516 DNLZQ5SXM8 178 aa8.45□□□□□ -1.06
CUX1-221ENST00000622516 VMO1Q7Z5L0 202 aa8.45□□□□□ -1.06
CUX1-221ENST00000622516 NEU4Q8WWR8 484 aaPredicted RBP8.45□□□□□ -1.06
CUX1-221ENST00000622516 AMMECR1Q9Y4X0 333 aaPredicted RBP8.45□□□□□ -1.06
CUX1-221ENST00000622516 TOX4O94842 621 aa8.45□□□□□ -1.06
CUX1-221ENST00000622516 CA1P00915 261 aaPredicted RBP8.45□□□□□ -1.06
CUX1-221ENST00000622516 RBP4P02753 201 aa8.45□□□□□ -1.06
CUX1-221ENST00000622516 SRP14P37108 136 aaKnown RBP8.45□□□□□ -1.06
CUX1-221ENST00000622516 TCL1AP56279 114 aa8.45□□□□□ -1.06
CUX1-221ENST00000622516 IMMP2LQ96T52 175 aa8.45□□□□□ -1.06
CUX1-221ENST00000622516 F11RQ9Y624 299 aaKnown RBP8.45□□□□□ -1.06
CUX1-221ENST00000622516 XKRY2A2RUG3 117 aa8.44□□□□□ -1.06
CUX1-221ENST00000622516 THAP8Q8NA92 274 aa8.44□□□□□ -1.06
CUX1-221ENST00000622516 OR1P1Q8NH06 330 aa8.44□□□□□ -1.06
CUX1-221ENST00000622516 C11orf52Q96A22 123 aa8.44□□□□□ -1.06
CUX1-221ENST00000622516 TMEM208Q9BTX3 173 aa8.44□□□□□ -1.06
CUX1-221ENST00000622516 CSPG4Q6UVK1 2322 aa8.44□□□□□ -1.06
CUX1-221ENST00000622516 TMEM238C9JI98 176 aa8.44□□□□□ -1.06
CUX1-221ENST00000622516 FSTL3O95633 263 aa8.44□□□□□ -1.06
CUX1-221ENST00000622516 LYZP61626 148 aa8.44□□□□□ -1.06
CUX1-221ENST00000622516 WFDC12Q8WWY7 111 aa8.44□□□□□ -1.06
CUX1-221ENST00000622516 CFHR4Q92496 578 aa8.44□□□□□ -1.06
CUX1-221ENST00000622516 ZNF462Q96JM2 2506 aa8.44□□□□□ -1.06
CUX1-221ENST00000622516 CRYGCP07315 174 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 CBLN1P23435 193 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 PRTN3P24158 256 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 TIGITQ495A1 244 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 DTX2Q86UW9 622 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 OR11H6Q8NGC7 330 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 FXYD5Q96DB9 178 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 C19orf24Q9BVV8 132 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 SERTAD4Q9NUC0 356 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 TRAPPC1Q9Y5R8 145 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 DOPEY1Q5JWR5 2465 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 ZANQ9Y493 2812 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 NBR2O15453 112 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 PF4V1P10720 104 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 PSG1P11464 419 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 NUDT10Q8NFP7 164 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 OR1L4Q8NGR5 311 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 MRPL32Q9BYC8 188 aaKnown RBP8.43□□□□□ -1.06
CUX1-221ENST00000622516 BPESC1Q9GZL8 116 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 EPG5Q9HCE0 2579 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 USP24Q9UPU5 2620 aa8.43□□□□□ -1.06
CUX1-221ENST00000622516 IGHV3-23P01764 117 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms