RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ADMP35318 185 aa11.48□□□□□ -0.57
TRIM28-207ENST00000597136 RAB31Q13636 194 aa11.48□□□□□ -0.57
TRIM28-207ENST00000597136 TIGITQ495A1 244 aa11.48□□□□□ -0.57
TRIM28-207ENST00000597136 FAM209BQ5JX69 171 aa11.48□□□□□ -0.57
TRIM28-207ENST00000597136 SPSB3Q6PJ21 355 aa11.48□□□□□ -0.57
TRIM28-207ENST00000597136 SLC51BQ86UW2 128 aa11.48□□□□□ -0.57
TRIM28-207ENST00000597136 NPCDR1Q9BY65 106 aa11.48□□□□□ -0.57
TRIM28-207ENST00000597136 ARV1Q9H2C2 271 aa11.48□□□□□ -0.57
TRIM28-207ENST00000597136 BMPR1BO00238 502 aa11.47□□□□□ -0.57
TRIM28-207ENST00000597136 NUPL2O15504 423 aaKnown RBP11.47□□□□□ -0.57
TRIM28-207ENST00000597136 TGOLN2O43493 480 aa11.47□□□□□ -0.57
TRIM28-207ENST00000597136 HOXD3P31249 432 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-207ENST00000597136 CAMLGP49069 296 aa11.47□□□□□ -0.57
TRIM28-207ENST00000597136 ZNF90Q03938 601 aa11.47□□□□□ -0.57
TRIM28-207ENST00000597136 HSD17B11Q8NBQ5 300 aa11.47□□□□□ -0.57
TRIM28-207ENST00000597136 STOML3Q8TAV4 291 aa11.47□□□□□ -0.57
TRIM28-207ENST00000597136 GINS3Q9BRX5 216 aa11.47□□□□□ -0.57
TRIM28-207ENST00000597136 DNAH3Q8TD57 4116 aa11.46□□□□□ -0.57
TRIM28-207ENST00000597136 SCGB2A1O75556 95 aa11.46□□□□□ -0.57
TRIM28-207ENST00000597136 ARL3P36405 182 aa11.46□□□□□ -0.57
TRIM28-207ENST00000597136 CYP2G1PQ6ZSU1 146 aa11.46□□□□□ -0.57
TRIM28-207ENST00000597136 RSG1Q9BU20 258 aa11.46□□□□□ -0.57
TRIM28-207ENST00000597136 GGTLC1Q9BX51 225 aa11.46□□□□□ -0.57
TRIM28-207ENST00000597136 SLC45A2Q9UMX9 530 aa11.46□□□□□ -0.57
TRIM28-207ENST00000597136 RFNGQ9Y644 331 aa11.46□□□□□ -0.57
TRIM28-207ENST00000597136 TPT1P13693 172 aaKnown RBP11.45□□□□□ -0.58
TRIM28-207ENST00000597136 ATP6V0CP27449 155 aa11.45□□□□□ -0.58
TRIM28-207ENST00000597136 YPEL3P61236 119 aaPredicted RBP11.45□□□□□ -0.58
TRIM28-207ENST00000597136 EIF5AP63241 154 aaKnown RBP11.45□□□□□ -0.58
TRIM28-207ENST00000597136 SAMD5Q5TGI4 173 aa11.45□□□□□ -0.58
TRIM28-207ENST00000597136 TMEM182Q6ZP80 229 aaPredicted RBP11.45□□□□□ -0.58
TRIM28-207ENST00000597136 BAP18Q8IXM2 172 aa11.45□□□□□ -0.58
TRIM28-207ENST00000597136 ZNF709Q8N972 641 aa11.45□□□□□ -0.58
TRIM28-207ENST00000597136 OVOL1O14753 267 aa11.45□□□□□ -0.58
TRIM28-207ENST00000597136 OR2C1O95371 312 aa11.45□□□□□ -0.58
TRIM28-207ENST00000597136 FABP1P07148 127 aa11.45□□□□□ -0.58
TRIM28-207ENST00000597136 RD3LP0DJH9 198 aa11.45□□□□□ -0.58
TRIM28-207ENST00000597136 GATA2P23769 480 aaPredicted RBP11.45□□□□□ -0.58
TRIM28-207ENST00000597136 RPL29P47914 159 aaKnown RBP11.45□□□□□ -0.58
TRIM28-207ENST00000597136 SELENOTP62341 195 aa11.45□□□□□ -0.58
TRIM28-207ENST00000597136 KLF5Q13887 457 aaPredicted RBP11.45□□□□□ -0.58
TRIM28-207ENST00000597136 ST8SIA2Q92186 375 aa11.45□□□□□ -0.58
TRIM28-207ENST00000597136 GNPNAT1Q96EK6 184 aaPredicted RBP11.45□□□□□ -0.58
TRIM28-207ENST00000597136 RCC1LQ96I51 464 aaKnown RBP11.45□□□□□ -0.58
TRIM28-207ENST00000597136 ZNF414Q96IQ9 312 aa11.45□□□□□ -0.58
TRIM28-207ENST00000597136 SH3BGRL3Q9H299 93 aa11.45□□□□□ -0.58
TRIM28-207ENST00000597136 IGHV3-35A0A0C4DH35 117 aa11.44□□□□□ -0.58
TRIM28-207ENST00000597136 C17orf112F2Z3M2 114 aa11.44□□□□□ -0.58
TRIM28-207ENST00000597136 GGCTO75223 188 aaKnown RBP11.44□□□□□ -0.58
TRIM28-207ENST00000597136 TOMM40O96008 361 aa11.44□□□□□ -0.58
TRIM28-207ENST00000597136 LINC00869P0C866 280 aa11.44□□□□□ -0.58
TRIM28-207ENST00000597136 PSG1P11464 419 aa11.44□□□□□ -0.58
TRIM28-207ENST00000597136 SYNJ2BPP57105 145 aa11.44□□□□□ -0.58
TRIM28-207ENST00000597136 MIC13Q5XKP0 118 aa11.44□□□□□ -0.58
TRIM28-207ENST00000597136 BPIFCQ8NFQ6 507 aa11.44□□□□□ -0.58
TRIM28-207ENST00000597136 PSMG3Q9BT73 122 aaPredicted RBP11.44□□□□□ -0.58
TRIM28-207ENST00000597136 TIMM9Q9Y5J7 89 aa11.44□□□□□ -0.58
TRIM28-207ENST00000597136 SPP1P10451 314 aa11.43□□□□□ -0.58
TRIM28-207ENST00000597136 ZP3P21754 424 aa11.43□□□□□ -0.58
TRIM28-207ENST00000597136 PRR20EP86478 221 aa11.43□□□□□ -0.58
TRIM28-207ENST00000597136 PRR20CP86479 221 aa11.43□□□□□ -0.58
TRIM28-207ENST00000597136 PRR20DP86480 221 aa11.43□□□□□ -0.58
TRIM28-207ENST00000597136 PRR20BP86481 221 aa11.43□□□□□ -0.58
TRIM28-207ENST00000597136 PRR20AP86496 221 aa11.43□□□□□ -0.58
TRIM28-207ENST00000597136 RELQ04864 619 aaPredicted RBP11.43□□□□□ -0.58
TRIM28-207ENST00000597136 RPEL1Q2QD12 228 aa11.43□□□□□ -0.58
TRIM28-207ENST00000597136 ZNF600Q6ZNG1 722 aa11.43□□□□□ -0.58
TRIM28-207ENST00000597136 STPG3Q8N7X2 389 aa11.43□□□□□ -0.58
TRIM28-207ENST00000597136 Q8WTZ3 238 aa11.43□□□□□ -0.58
TRIM28-207ENST00000597136 SLC25A32Q9H2D1 315 aa11.43□□□□□ -0.58
TRIM28-207ENST00000597136 PXMP4Q9Y6I8 212 aa11.43□□□□□ -0.58
TRIM28-207ENST00000597136 SEC14L6B5MCN3 397 aa11.42□□□□□ -0.58
TRIM28-207ENST00000597136 B2MP61769 119 aa11.42□□□□□ -0.58
TRIM28-207ENST00000597136 BEAN1Q3B7T3 259 aa11.42□□□□□ -0.58
TRIM28-207ENST00000597136 OR51G1Q8NGK1 321 aa11.42□□□□□ -0.58
TRIM28-207ENST00000597136 KCNIP2Q9NS61 270 aa11.42□□□□□ -0.58
TRIM28-207ENST00000597136 SLC39A9Q9NUM3 307 aa11.42□□□□□ -0.58
TRIM28-207ENST00000597136 PUS1Q9Y606 427 aaKnown RBP eCLIP11.42□□□□□ -0.58
TRIM28-207ENST00000597136 PRB2P02812 416 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-207ENST00000597136 SEC11BP0C7V7 166 aa11.41□□□□□ -0.58
TRIM28-207ENST00000597136 EDN2P20800 178 aa11.41□□□□□ -0.58
TRIM28-207ENST00000597136 SERF2P84101 59 aa11.41□□□□□ -0.58
TRIM28-207ENST00000597136 IL34Q6ZMJ4 242 aa11.41□□□□□ -0.58
TRIM28-207ENST00000597136 OR2G3Q8NGZ4 309 aa11.41□□□□□ -0.58
TRIM28-207ENST00000597136 TMED6Q8WW62 240 aa11.41□□□□□ -0.58
TRIM28-207ENST00000597136 WI2-2373I1.2A0A1W2PRP0 233 aa11.41□□□□□ -0.58
TRIM28-207ENST00000597136 YIF1AO95070 293 aa11.41□□□□□ -0.58
TRIM28-207ENST00000597136 CFDP00746 253 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-207ENST00000597136 KRTAP10-11P60412 298 aa11.41□□□□□ -0.58
TRIM28-207ENST00000597136 FFAR4Q5NUL3 377 aa11.41□□□□□ -0.58
TRIM28-207ENST00000597136 TOMM20LQ6UXN7 152 aa11.41□□□□□ -0.58
TRIM28-207ENST00000597136 GPHB5Q86YW7 130 aa11.41□□□□□ -0.58
TRIM28-207ENST00000597136 ZFAND3Q9H8U3 227 aa11.41□□□□□ -0.58
TRIM28-207ENST00000597136 NDUFA4O00483 81 aa11.4□□□□□ -0.58
TRIM28-207ENST00000597136 IL4P05112 153 aa11.4□□□□□ -0.58
TRIM28-207ENST00000597136 PLP1P60201 277 aa11.4□□□□□ -0.58
TRIM28-207ENST00000597136 FAM106AQ4KMX7 169 aa11.4□□□□□ -0.58
TRIM28-207ENST00000597136 EIF5AL1Q6IS14 154 aaKnown RBP11.4□□□□□ -0.58
TRIM28-207ENST00000597136 Q6ZRG5 221 aa11.4□□□□□ -0.58
TRIM28-207ENST00000597136 RNF125Q96EQ8 232 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms