RNA–Protein interactions for RNA: ENST00000595659.5

CCDC9-202, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 356 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-202ENST00000595659 HLA-DMBP28068 263 aa12.34□□□□□ -0.43
CCDC9-202ENST00000595659 PRR20EP86478 221 aa12.34□□□□□ -0.43
CCDC9-202ENST00000595659 PRR20CP86479 221 aa12.34□□□□□ -0.43
CCDC9-202ENST00000595659 PRR20DP86480 221 aa12.34□□□□□ -0.43
CCDC9-202ENST00000595659 PRR20BP86481 221 aa12.34□□□□□ -0.43
CCDC9-202ENST00000595659 PRR20AP86496 221 aa12.34□□□□□ -0.43
CCDC9-202ENST00000595659 KLF9Q13886 244 aaPredicted RBP12.34□□□□□ -0.43
CCDC9-202ENST00000595659 SIGLEC15Q6ZMC9 328 aa12.34□□□□□ -0.43
CCDC9-202ENST00000595659 TMED4Q7Z7H5 227 aa12.34□□□□□ -0.43
CCDC9-202ENST00000595659 OR1S1Q8NH92 325 aa12.34□□□□□ -0.43
CCDC9-202ENST00000595659 MCFD2Q8NI22 146 aa12.34□□□□□ -0.43
CCDC9-202ENST00000595659 SHPKQ9UHJ6 478 aa12.34□□□□□ -0.43
CCDC9-202ENST00000595659 U3KQ87 197 aa12.34□□□□□ -0.43
CCDC9-202ENST00000595659 ZNF705EA8MWA4 302 aaPredicted RBP12.33□□□□□ -0.44
CCDC9-202ENST00000595659 NOL3O60936 208 aaKnown RBP12.33□□□□□ -0.44
CCDC9-202ENST00000595659 DEFB1P60022 68 aa12.33□□□□□ -0.44
CCDC9-202ENST00000595659 ZNF90Q03938 601 aa12.33□□□□□ -0.44
CCDC9-202ENST00000595659 TMEM41BQ5BJD5 291 aa12.33□□□□□ -0.44
CCDC9-202ENST00000595659 ZNF767PQ75MW2 155 aa12.33□□□□□ -0.44
CCDC9-202ENST00000595659 CSNK1G2-AS1Q8NCQ2 148 aa12.33□□□□□ -0.44
CCDC9-202ENST00000595659 BCL7BQ9BQE9 202 aa12.33□□□□□ -0.44
CCDC9-202ENST00000595659 NRN1Q9NPD7 142 aa12.33□□□□□ -0.44
CCDC9-202ENST00000595659 CACFD1Q9UGQ2 172 aa12.33□□□□□ -0.44
CCDC9-202ENST00000595659 TBC1D24Q9ULP9 559 aa12.33□□□□□ -0.44
CCDC9-202ENST00000595659 ZFP92A6NM28 416 aa12.32□□□□□ -0.44
CCDC9-202ENST00000595659 IAPPP10997 89 aa12.32□□□□□ -0.44
CCDC9-202ENST00000595659 ANXA3P12429 323 aa12.32□□□□□ -0.44
CCDC9-202ENST00000595659 MIFP14174 115 aa12.32□□□□□ -0.44
CCDC9-202ENST00000595659 SNRPD3P62318 126 aaKnown RBP12.32□□□□□ -0.44
CCDC9-202ENST00000595659 GAMTQ14353 236 aa12.32□□□□□ -0.44
CCDC9-202ENST00000595659 PYDC2Q56P42 97 aa12.32□□□□□ -0.44
CCDC9-202ENST00000595659 Q6ZTC4 211 aa12.32□□□□□ -0.44
CCDC9-202ENST00000595659 RNF125Q96EQ8 232 aa12.32□□□□□ -0.44
CCDC9-202ENST00000595659 XCL2Q9UBD3 114 aa12.32□□□□□ -0.44
CCDC9-202ENST00000595659 PAIP2BQ9ULR5 123 aaKnown RBP12.32□□□□□ -0.44
CCDC9-202ENST00000595659 APLNQ9ULZ1 77 aa12.32□□□□□ -0.44
CCDC9-202ENST00000595659 IGKV1D-37A0A075B6S9 117 aa12.31□□□□□ -0.44
CCDC9-202ENST00000595659 IGKV3-20P01619 116 aa12.31□□□□□ -0.44
CCDC9-202ENST00000595659 OR2F1Q13607 317 aa12.31□□□□□ -0.44
CCDC9-202ENST00000595659 FRAS1Q86XX4 4008 aa12.3□□□□□ -0.44
CCDC9-202ENST00000595659 H3BMM0 161 aa12.3□□□□□ -0.44
CCDC9-202ENST00000595659 VAMP1P23763 118 aa12.3□□□□□ -0.44
CCDC9-202ENST00000595659 FXYD7P58549 80 aa12.3□□□□□ -0.44
CCDC9-202ENST00000595659 LYZP61626 148 aa12.3□□□□□ -0.44
CCDC9-202ENST00000595659 SRPXP78539 464 aa12.3□□□□□ -0.44
CCDC9-202ENST00000595659 GDF5OSQ5U4N7 250 aa12.3□□□□□ -0.44
CCDC9-202ENST00000595659 SLC35E1Q96K37 410 aa12.3□□□□□ -0.44
CCDC9-202ENST00000595659 LINC00052Q96N35 136 aa12.3□□□□□ -0.44
CCDC9-202ENST00000595659 WDR12Q9GZL7 423 aaKnown RBP12.3□□□□□ -0.44
CCDC9-202ENST00000595659 HRH4Q9H3N8 390 aa12.3□□□□□ -0.44
CCDC9-202ENST00000595659 CELA1Q9UNI1 258 aa12.3□□□□□ -0.44
CCDC9-202ENST00000595659 C11orf94C9JXX5 98 aa12.29□□□□□ -0.44
CCDC9-202ENST00000595659 GPX4P36969 197 aaPredicted RBP12.29□□□□□ -0.44
CCDC9-202ENST00000595659 TOMM5Q8N4H5 51 aa12.29□□□□□ -0.44
CCDC9-202ENST00000595659 TRIM63Q969Q1 353 aa12.29□□□□□ -0.44
CCDC9-202ENST00000595659 PITX3O75364 302 aa12.28□□□□□ -0.44
CCDC9-202ENST00000595659 FAUP35544 74 aaKnown RBP12.28□□□□□ -0.44
CCDC9-202ENST00000595659 CENPSQ8N2Z9 138 aa12.28□□□□□ -0.44
CCDC9-202ENST00000595659 MAGT1Q9H0U3 335 aa12.28□□□□□ -0.44
CCDC9-202ENST00000595659 AGRNO00468 2067 aa12.27□□□□□ -0.45
CCDC9-202ENST00000595659 TRAV10A0A0B4J240 114 aa12.27□□□□□ -0.45
CCDC9-202ENST00000595659 NUTF2P61970 127 aaKnown RBP12.27□□□□□ -0.45
CCDC9-202ENST00000595659 C12orf74Q32Q52 190 aa12.27□□□□□ -0.45
CCDC9-202ENST00000595659 TMEM128Q5BJH2 165 aa12.27□□□□□ -0.45
CCDC9-202ENST00000595659 PPP1R14BQ96C90 147 aa12.27□□□□□ -0.45
CCDC9-202ENST00000595659 SEPSECSQ9HD40 501 aaKnown RBP12.27□□□□□ -0.45
CCDC9-202ENST00000595659 V9GYH0 126 aa12.27□□□□□ -0.45
CCDC9-202ENST00000595659 IGHV4-4A0A075B6R2 117 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 IGHV3OR16-12A0A075B7B8 117 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 CCDC160A6NGH7 325 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 SNRPGP15A8MWD9 76 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 HOXB5P09067 269 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 HLA-DRB4P13762 266 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 NKX2-1P43699 371 aaPredicted RBP12.26□□□□□ -0.45
CCDC9-202ENST00000595659 ATP5IP56385 69 aaPredicted RBP12.26□□□□□ -0.45
CCDC9-202ENST00000595659 TCTAP57738 103 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 AP3S2P59780 193 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 RAB11AP62491 216 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 PPP1R1AQ13522 171 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 ZNF79Q15937 498 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 OR8G2PQ6IF36 304 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 SCRT1Q9BWW7 348 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 C1QTNF4Q9BXJ3 329 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 PFDN2Q9UHV9 154 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 HLA-DRB4X5D2U9 266 aa12.26□□□□□ -0.45
CCDC9-202ENST00000595659 IGKV1OR2-108A0A075B7D4 117 aa12.25□□□□□ -0.45
CCDC9-202ENST00000595659 DUXBA0A1W2PPF3 345 aa12.25□□□□□ -0.45
CCDC9-202ENST00000595659 WRBO00258 174 aa12.25□□□□□ -0.45
CCDC9-202ENST00000595659 SFT2D2O95562 160 aa12.25□□□□□ -0.45
CCDC9-202ENST00000595659 EMP1P54849 157 aa12.25□□□□□ -0.45
CCDC9-202ENST00000595659 OR4B1Q8NGF8 309 aa12.25□□□□□ -0.45
CCDC9-202ENST00000595659 DEFB131BA0A096LNP1 70 aa12.24□□□□□ -0.45
CCDC9-202ENST00000595659 F6UB75 175 aa12.24□□□□□ -0.45
CCDC9-202ENST00000595659 FABP1P07148 127 aa12.24□□□□□ -0.45
CCDC9-202ENST00000595659 NUP62P37198 522 aaPredicted RBP12.24□□□□□ -0.45
CCDC9-202ENST00000595659 ID1P41134 155 aa12.24□□□□□ -0.45
CCDC9-202ENST00000595659 OR8I2Q8N0Y5 310 aa12.24□□□□□ -0.45
CCDC9-202ENST00000595659 COQ8AQ8NI60 647 aa12.24□□□□□ -0.45
CCDC9-202ENST00000595659 TRGV9Q99603 122 aa12.24□□□□□ -0.45
CCDC9-202ENST00000595659 SAV1Q9H4B6 383 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms