RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 LYL1P12980 280 aa8.12□□□□□ -1.11
CLIP3-203ENST00000586457 RPL35AP18077 110 aaKnown RBP8.12□□□□□ -1.11
CLIP3-203ENST00000586457 POLR2GP62487 172 aaKnown RBP eCLIP8.12□□□□□ -1.11
CLIP3-203ENST00000586457 APRG1Q8IVJ8 170 aa8.12□□□□□ -1.11
CLIP3-203ENST00000586457 IL17DQ8TAD2 202 aa8.12□□□□□ -1.11
CLIP3-203ENST00000586457 MITD1Q8WV92 249 aa8.12□□□□□ -1.11
CLIP3-203ENST00000586457 TMEM170AQ8WVE7 144 aa8.12□□□□□ -1.11
CLIP3-203ENST00000586457 FAM110AQ9BQ89 295 aa8.12□□□□□ -1.11
CLIP3-203ENST00000586457 GPN1Q9HCN4 374 aaPredicted RBP8.12□□□□□ -1.11
CLIP3-203ENST00000586457 PVALBP20472 110 aaPredicted RBP8.11□□□□□ -1.11
CLIP3-203ENST00000586457 BTCP35070 178 aa8.11□□□□□ -1.11
CLIP3-203ENST00000586457 DEFA1P59665 94 aa8.11□□□□□ -1.11
CLIP3-203ENST00000586457 DEFA3P59666 94 aa8.11□□□□□ -1.11
CLIP3-203ENST00000586457 LYZP61626 148 aa8.11□□□□□ -1.11
CLIP3-203ENST00000586457 ID3Q02535 119 aa8.11□□□□□ -1.11
CLIP3-203ENST00000586457 OR2F1Q13607 317 aa8.11□□□□□ -1.11
CLIP3-203ENST00000586457 OR8G2PQ6IF36 304 aa8.11□□□□□ -1.11
CLIP3-203ENST00000586457 LINC00322Q6ZN03 302 aaPredicted RBP8.11□□□□□ -1.11
CLIP3-203ENST00000586457 C12orf45Q8N5I9 185 aaPredicted RBP8.11□□□□□ -1.11
CLIP3-203ENST00000586457 MUC7Q8TAX7 377 aa8.11□□□□□ -1.11
CLIP3-203ENST00000586457 ZNF431Q8TF32 576 aaPredicted RBP8.11□□□□□ -1.11
CLIP3-203ENST00000586457 RNF125Q96EQ8 232 aa8.11□□□□□ -1.11
CLIP3-203ENST00000586457 SMIM8Q96KF7 97 aa8.11□□□□□ -1.11
CLIP3-203ENST00000586457 CITED4Q96RK1 184 aa8.11□□□□□ -1.11
CLIP3-203ENST00000586457 RAB40CQ96S21 281 aa8.11□□□□□ -1.11
CLIP3-203ENST00000586457 TRAV2A0A0B4J234 112 aa8.1□□□□□ -1.11
CLIP3-203ENST00000586457 MPTX1A8MV57 137 aa8.1□□□□□ -1.11
CLIP3-203ENST00000586457 BCAP31P51572 246 aa8.1□□□□□ -1.11
CLIP3-203ENST00000586457 DEFB131AP59861 70 aa8.1□□□□□ -1.11
CLIP3-203ENST00000586457 SNRPD3P62318 126 aaKnown RBP8.1□□□□□ -1.11
CLIP3-203ENST00000586457 FAM90A2PQ658T7 463 aa8.1□□□□□ -1.11
CLIP3-203ENST00000586457 GSG1LQ6UXU4 331 aa8.1□□□□□ -1.11
CLIP3-203ENST00000586457 S100A7AQ86SG5 101 aa8.1□□□□□ -1.11
CLIP3-203ENST00000586457 STHQ8IWL8 128 aa8.1□□□□□ -1.11
CLIP3-203ENST00000586457 ZBTB8BQ8NAP8 495 aaPredicted RBP8.1□□□□□ -1.11
CLIP3-203ENST00000586457 BPIFCQ8NFQ6 507 aa8.1□□□□□ -1.11
CLIP3-203ENST00000586457 OR10P1Q8NGE3 313 aa8.1□□□□□ -1.11
CLIP3-203ENST00000586457 RETNQ9HD89 108 aa8.1□□□□□ -1.11
CLIP3-203ENST00000586457 MGAT4CQ9UBM8 478 aa8.1□□□□□ -1.11
CLIP3-203ENST00000586457 FBXL17Q9UF56 701 aa8.1□□□□□ -1.11
CLIP3-203ENST00000586457 KIR2DL5BA0A0G2JN68 375 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 KIR2DL5BA0A0G2JPC4 375 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 SPRY2O43597 315 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 UPK1BO75841 260 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 ZNF90Q03938 601 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 ASAH1Q13510 395 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 USF2Q15853 346 aaPredicted RBP8.09□□□□□ -1.11
CLIP3-203ENST00000586457 ODF3L2Q3SX64 289 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 C16orf54Q6UWD8 224 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 SIGLEC15Q6ZMC9 328 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 Q6ZWC4 215 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 OR8I2Q8N0Y5 310 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 KIR2DL5AQ8N109 375 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 LILRB2Q8N423 598 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 OR4D5Q8NGN0 318 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 KIR2DL5BQ8NHK3 375 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 ZNF414Q96IQ9 312 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 TRGV9Q99603 122 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 SEC22CQ9BRL7 303 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 CSTL1Q9H114 145 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 MAP6D1Q9H9H5 199 aa8.09□□□□□ -1.11
CLIP3-203ENST00000586457 LSM5Q9Y4Y9 91 aaKnown RBP8.09□□□□□ -1.11
CLIP3-203ENST00000586457 CCSO14618 274 aa8.08□□□□□ -1.12
CLIP3-203ENST00000586457 IL5P05113 134 aa8.08□□□□□ -1.12
CLIP3-203ENST00000586457 METTL15P1P0C7V9 234 aa8.08□□□□□ -1.12
CLIP3-203ENST00000586457 ZNF688P0C7X2 276 aa8.08□□□□□ -1.12
CLIP3-203ENST00000586457 ORM2P19652 201 aa8.08□□□□□ -1.12
CLIP3-203ENST00000586457 ID1P41134 155 aa8.08□□□□□ -1.12
CLIP3-203ENST00000586457 TAS2R30P59541 319 aa8.08□□□□□ -1.12
CLIP3-203ENST00000586457 LEMD1Q68G75 181 aa8.08□□□□□ -1.12
CLIP3-203ENST00000586457 C2orf50Q96LR7 162 aa8.08□□□□□ -1.12
CLIP3-203ENST00000586457 TMEM147Q9BVK8 224 aa8.08□□□□□ -1.12
CLIP3-203ENST00000586457 BUB3O43684 328 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 TSC22D2O75157 780 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 RLN2P04090 185 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 CAV2P51636 162 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 S100A10P60903 97 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 RAP2BP61225 183 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 RRAS2P62070 204 aaPredicted RBP8.07□□□□□ -1.12
CLIP3-203ENST00000586457 RAB31Q13636 194 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 DEFB135Q30KP9 77 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 C1orf194Q5T5A4 169 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 ACOT7LQ6ZUV0 252 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 TMEM217Q8N7C4 229 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 OR1B1Q8NGR6 318 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 NPVFQ9HCQ7 196 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 NRN1Q9NPD7 142 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 TP53TG1Q9Y2A0 90 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 U3KQE9 123 aa8.07□□□□□ -1.12
CLIP3-203ENST00000586457 K7EQG2 157 aa8.06□□□□□ -1.12
CLIP3-203ENST00000586457 GOSR2O14653 212 aa8.06□□□□□ -1.12
CLIP3-203ENST00000586457 MBPP02686 304 aaPredicted RBP8.06□□□□□ -1.12
CLIP3-203ENST00000586457 GALR1P47211 349 aa8.06□□□□□ -1.12
CLIP3-203ENST00000586457 NUTF2P61970 127 aaKnown RBP8.06□□□□□ -1.12
CLIP3-203ENST00000586457 SELENOTP62341 195 aa8.06□□□□□ -1.12
CLIP3-203ENST00000586457 ZNF124Q15973 351 aa8.06□□□□□ -1.12
CLIP3-203ENST00000586457 PSMG4Q5JS54 123 aa8.06□□□□□ -1.12
CLIP3-203ENST00000586457 SAMD13Q5VXD3 122 aa8.06□□□□□ -1.12
CLIP3-203ENST00000586457 ZFAND6Q6FIF0 208 aa8.06□□□□□ -1.12
CLIP3-203ENST00000586457 TEPPQ6URK8 271 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms