RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 NPY1RP25929 384 aa8.39□□□□□ -1.07
USP3-220ENST00000561381 TCTAP57738 103 aa8.39□□□□□ -1.07
USP3-220ENST00000561381 SSBP1Q04837 148 aaKnown RBP8.39□□□□□ -1.07
USP3-220ENST00000561381 OR51S1Q8NGJ8 323 aa8.39□□□□□ -1.07
USP3-220ENST00000561381 ACY3Q96HD9 319 aa8.39□□□□□ -1.07
USP3-220ENST00000561381 IGHV4-4A0A075B6R2 117 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 TRAV10A0A0B4J240 114 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 BUB3O43684 328 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 TOMM40O96008 361 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 AKAIN1P0CW23 69 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 RD3LP0DJH9 198 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 EIF2B2P49770 351 aaKnown RBP8.38□□□□□ -1.07
USP3-220ENST00000561381 DEFB1P60022 68 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 MRPS10P82664 201 aaKnown RBP8.38□□□□□ -1.07
USP3-220ENST00000561381 SURF2Q15527 256 aaPredicted RBP8.38□□□□□ -1.07
USP3-220ENST00000561381 C12orf74Q32Q52 190 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 NMSQ5H8A3 153 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 GSG1LQ6UXU4 331 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 OR51G1Q8NGK1 321 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 SCRT1Q9BWW7 348 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 XCL2Q9UBD3 114 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 TMEM56-RWDD3S4R434 201 aa8.38□□□□□ -1.07
USP3-220ENST00000561381 H3BMM0 161 aa8.37□□□□□ -1.07
USP3-220ENST00000561381 IFNA10P01566 189 aa8.37□□□□□ -1.07
USP3-220ENST00000561381 SULT1A3P0DMM9 295 aa8.37□□□□□ -1.07
USP3-220ENST00000561381 SULT1A4P0DMN0 295 aa8.37□□□□□ -1.07
USP3-220ENST00000561381 PSG1P11464 419 aa8.37□□□□□ -1.07
USP3-220ENST00000561381 ALDH3B2P48448 385 aa8.37□□□□□ -1.07
USP3-220ENST00000561381 AP2S1P53680 142 aaPredicted RBP8.37□□□□□ -1.07
USP3-220ENST00000561381 SNRPD3P62318 126 aaKnown RBP8.37□□□□□ -1.07
USP3-220ENST00000561381 IL18Q14116 193 aa8.37□□□□□ -1.07
USP3-220ENST00000561381 ETFRF1Q6IPR1 90 aa8.37□□□□□ -1.07
USP3-220ENST00000561381 SIGLEC15Q6ZMC9 328 aa8.37□□□□□ -1.07
USP3-220ENST00000561381 GPR141Q7Z602 305 aa8.37□□□□□ -1.07
USP3-220ENST00000561381 CLVS1Q8IUQ0 354 aaPredicted RBP8.37□□□□□ -1.07
USP3-220ENST00000561381 DIRAS2Q96HU8 199 aa8.37□□□□□ -1.07
USP3-220ENST00000561381 NRN1Q9NPD7 142 aa8.37□□□□□ -1.07
USP3-220ENST00000561381 KIAA1109Q2LD37 5005 aa8.37□□□□□ -1.07
USP3-220ENST00000561381 CTDSPLO15194 276 aa8.36□□□□□ -1.07
USP3-220ENST00000561381 SUPT4H1P63272 117 aaKnown RBP8.36□□□□□ -1.07
USP3-220ENST00000561381 GDF5OSQ5U4N7 250 aa8.36□□□□□ -1.07
USP3-220ENST00000561381 LYZL2Q7Z4W2 148 aa8.36□□□□□ -1.07
USP3-220ENST00000561381 IL22RA2Q969J5 263 aa8.36□□□□□ -1.07
USP3-220ENST00000561381 PRRT1Q99946 306 aa8.36□□□□□ -1.07
USP3-220ENST00000561381 PBDC1Q9BVG4 233 aa8.36□□□□□ -1.07
USP3-220ENST00000561381 RBKSQ9H477 322 aa8.36□□□□□ -1.07
USP3-220ENST00000561381 IGKV1D-37A0A075B6S9 117 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 DEFB131BA0A096LNP1 70 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 ANKRD20A5PA0PJZ0 165 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 IGKV3-20P01619 116 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 HLA-DRB4P13762 266 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 AKR1C4P17516 323 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 FXYD7P58549 80 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 ZNF90Q03938 601 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 KLF9Q13886 244 aaPredicted RBP8.35□□□□□ -1.07
USP3-220ENST00000561381 LGI3Q8N145 548 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 DYNC2LI1Q8TCX1 351 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 DTD1Q8TEA8 209 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 RNF125Q96EQ8 232 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 RNF126Q9BV68 326 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 MRPS26Q9BYN8 205 aaKnown RBP8.35□□□□□ -1.07
USP3-220ENST00000561381 WDR12Q9GZL7 423 aaKnown RBP8.35□□□□□ -1.07
USP3-220ENST00000561381 SEPSECSQ9HD40 501 aaKnown RBP8.35□□□□□ -1.07
USP3-220ENST00000561381 HSPB7Q9UBY9 170 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 KCNIP3Q9Y2W7 256 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 U3KQ87 197 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 HLA-DRB4X5D2U9 266 aa8.35□□□□□ -1.07
USP3-220ENST00000561381 A0A0B4J2A0 478 aa8.34□□□□□ -1.07
USP3-220ENST00000561381 GSTZ1O43708 216 aaPredicted RBP8.34□□□□□ -1.07
USP3-220ENST00000561381 NKX2-1P43699 371 aaPredicted RBP8.34□□□□□ -1.07
USP3-220ENST00000561381 CCR6P51684 374 aa8.34□□□□□ -1.07
USP3-220ENST00000561381 NUTF2P61970 127 aaKnown RBP8.34□□□□□ -1.07
USP3-220ENST00000561381 GAMTQ14353 236 aa8.34□□□□□ -1.07
USP3-220ENST00000561381 SMCO1Q147U7 214 aa8.34□□□□□ -1.07
USP3-220ENST00000561381 NOXA1Q86UR1 476 aa8.34□□□□□ -1.07
USP3-220ENST00000561381 CENPSQ8N2Z9 138 aa8.34□□□□□ -1.07
USP3-220ENST00000561381 LINC00052Q96N35 136 aa8.34□□□□□ -1.07
USP3-220ENST00000561381 C1QTNF4Q9BXJ3 329 aa8.34□□□□□ -1.07
USP3-220ENST00000561381 MCUBQ9NWR8 336 aa8.34□□□□□ -1.07
USP3-220ENST00000561381 SHPKQ9UHJ6 478 aa8.34□□□□□ -1.07
USP3-220ENST00000561381 HECTD4Q9Y4D8 3996 aa8.33□□□□□ -1.08
USP3-220ENST00000561381 IGHV3OR16-12A0A075B7B8 117 aa8.33□□□□□ -1.08
USP3-220ENST00000561381 ZFP92A6NM28 416 aa8.33□□□□□ -1.08
USP3-220ENST00000561381 ZNF705FA8MVS1 300 aaPredicted RBP8.33□□□□□ -1.08
USP3-220ENST00000561381 AMBPP02760 352 aa8.33□□□□□ -1.08
USP3-220ENST00000561381 ZNF705DP0CH99 300 aaPredicted RBP8.33□□□□□ -1.08
USP3-220ENST00000561381 ZNF705BP0CI00 300 aaPredicted RBP8.33□□□□□ -1.08
USP3-220ENST00000561381 EMP1P54849 157 aa8.33□□□□□ -1.08
USP3-220ENST00000561381 LYZP61626 148 aa8.33□□□□□ -1.08
USP3-220ENST00000561381 OR2F1Q13607 317 aa8.33□□□□□ -1.08
USP3-220ENST00000561381 ZNF705AQ6ZN79 300 aaPredicted RBP8.33□□□□□ -1.08
USP3-220ENST00000561381 CCDC59Q9P031 241 aaKnown RBP8.33□□□□□ -1.08
USP3-220ENST00000561381 SCP2D1Q9UJQ7 156 aa8.33□□□□□ -1.08
USP3-220ENST00000561381 SOCS3O14543 225 aa8.32□□□□□ -1.08
USP3-220ENST00000561381 IAPPP10997 89 aa8.32□□□□□ -1.08
USP3-220ENST00000561381 OR8G2PQ6IF36 304 aa8.32□□□□□ -1.08
USP3-220ENST00000561381 ZNF709Q8N972 641 aa8.32□□□□□ -1.08
USP3-220ENST00000561381 OR1S1Q8NH92 325 aa8.32□□□□□ -1.08
USP3-220ENST00000561381 SCGB3A2Q96PL1 93 aa8.32□□□□□ -1.08
USP3-220ENST00000561381 SOSTQ9BQB4 213 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms