RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ASB13Q8WXK3 278 aa9.79□□□□□ -0.84
NEDD8-208ENST00000560427 SORL1Q92673 2214 aa9.79□□□□□ -0.84
NEDD8-208ENST00000560427 IGKV1OR2-108A0A075B7D4 117 aa9.78□□□□□ -0.84
NEDD8-208ENST00000560427 A8MZ25 164 aa9.78□□□□□ -0.84
NEDD8-208ENST00000560427 E5RGE8 158 aa9.78□□□□□ -0.84
NEDD8-208ENST00000560427 SIX6O95475 246 aa9.78□□□□□ -0.84
NEDD8-208ENST00000560427 HNRNPCP07910 306 aaKnown RBP eCLIP9.78□□□□□ -0.84
NEDD8-208ENST00000560427 SULT1A1P50225 295 aa9.78□□□□□ -0.84
NEDD8-208ENST00000560427 HBG1P69891 147 aa9.78□□□□□ -0.84
NEDD8-208ENST00000560427 HBG2P69892 147 aa9.78□□□□□ -0.84
NEDD8-208ENST00000560427 GUCA2BQ16661 112 aa9.78□□□□□ -0.84
NEDD8-208ENST00000560427 RNF125Q96EQ8 232 aa9.78□□□□□ -0.84
NEDD8-208ENST00000560427 WDR89Q96FK6 387 aaPredicted RBP9.78□□□□□ -0.84
NEDD8-208ENST00000560427 GRAMD2BQ96HH9 432 aa9.78□□□□□ -0.84
NEDD8-208ENST00000560427 NPVFQ9HCQ7 196 aa9.78□□□□□ -0.84
NEDD8-208ENST00000560427 SMCO3A2RU48 225 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 OR4C46A6NHA9 309 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 S100A7P31151 101 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 S100A11P31949 105 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 P2RY1P47900 373 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 EIF2B2P49770 351 aaKnown RBP9.77□□□□□ -0.85
NEDD8-208ENST00000560427 CD81P60033 236 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 SELENOTP62341 195 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 ZNF90Q03938 601 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 USF2Q15853 346 aaPredicted RBP9.77□□□□□ -0.85
NEDD8-208ENST00000560427 DEFB121Q5J5C9 76 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 FAM90A2PQ658T7 463 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 Q8N1Y9 231 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 TMEM252Q8N6L7 170 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 PPP1R1CQ8WVI7 109 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 ST8SIA2Q92186 375 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 RNF2Q99496 336 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 SLC25A31Q9H0C2 315 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 MED28Q9H204 178 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 RABAC1Q9UI14 185 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 SLC45A2Q9UMX9 530 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 U3KQE9 123 aa9.77□□□□□ -0.85
NEDD8-208ENST00000560427 TRAV2A0A0B4J234 112 aa9.76□□□□□ -0.85
NEDD8-208ENST00000560427 FAM24AA6NFZ4 105 aa9.76□□□□□ -0.85
NEDD8-208ENST00000560427 CCNKO75909 580 aa9.76□□□□□ -0.85
NEDD8-208ENST00000560427 RRAS2P62070 204 aaPredicted RBP9.76□□□□□ -0.85
NEDD8-208ENST00000560427 BAXQ07812 192 aa9.76□□□□□ -0.85
NEDD8-208ENST00000560427 SLC38A11Q08AI6 406 aa9.76□□□□□ -0.85
NEDD8-208ENST00000560427 LRRC37A5PQ49AS3 106 aa9.76□□□□□ -0.85
NEDD8-208ENST00000560427 TEPPQ6URK8 271 aa9.76□□□□□ -0.85
NEDD8-208ENST00000560427 BPIFCQ8NFQ6 507 aa9.76□□□□□ -0.85
NEDD8-208ENST00000560427 B9D2Q9BPU9 175 aa9.76□□□□□ -0.85
NEDD8-208ENST00000560427 FAM110AQ9BQ89 295 aa9.76□□□□□ -0.85
NEDD8-208ENST00000560427 NEURL2Q9BR09 285 aa9.76□□□□□ -0.85
NEDD8-208ENST00000560427 PRKDCP78527 4128 aaKnown RBP9.75□□□□□ -0.85
NEDD8-208ENST00000560427 IGHV3-49A0A0A0MS15 119 aa9.75□□□□□ -0.85
NEDD8-208ENST00000560427 IGSF23A1L1A6 192 aa9.75□□□□□ -0.85
NEDD8-208ENST00000560427 HELTA6NFD8 242 aa9.75□□□□□ -0.85
NEDD8-208ENST00000560427 MPC2O95563 127 aa9.75□□□□□ -0.85
NEDD8-208ENST00000560427 APOHP02749 345 aaPredicted RBP9.75□□□□□ -0.85
NEDD8-208ENST00000560427 AP2S1P53680 142 aaPredicted RBP9.75□□□□□ -0.85
NEDD8-208ENST00000560427 PAFAH1B2P68402 229 aa9.75□□□□□ -0.85
NEDD8-208ENST00000560427 ARL16Q0P5N6 197 aa9.75□□□□□ -0.85
NEDD8-208ENST00000560427 ATP6V1FQ16864 119 aa9.75□□□□□ -0.85
NEDD8-208ENST00000560427 VWC2Q2TAL6 325 aa9.75□□□□□ -0.85
NEDD8-208ENST00000560427 CYP2G1PQ6ZSU1 146 aa9.75□□□□□ -0.85
NEDD8-208ENST00000560427 TCF24Q7RTU0 167 aa9.75□□□□□ -0.85
NEDD8-208ENST00000560427 ZNF546Q86UE3 836 aa9.75□□□□□ -0.85
NEDD8-208ENST00000560427 LILRB2Q8N423 598 aa9.75□□□□□ -0.85
NEDD8-208ENST00000560427 TMEM147Q9BVK8 224 aa9.75□□□□□ -0.85
NEDD8-208ENST00000560427 CST7O76096 145 aa9.74□□□□□ -0.85
NEDD8-208ENST00000560427 IGHV4-30-4P0DP06 118 aa9.74□□□□□ -0.85
NEDD8-208ENST00000560427 CXCL3P19876 107 aa9.74□□□□□ -0.85
NEDD8-208ENST00000560427 CMC4P56277 68 aaPredicted RBP9.74□□□□□ -0.85
NEDD8-208ENST00000560427 LYZP61626 148 aa9.74□□□□□ -0.85
NEDD8-208ENST00000560427 RAB31Q13636 194 aa9.74□□□□□ -0.85
NEDD8-208ENST00000560427 FCN2Q15485 313 aa9.74□□□□□ -0.85
NEDD8-208ENST00000560427 C1orf194Q5T5A4 169 aa9.74□□□□□ -0.85
NEDD8-208ENST00000560427 S100A7AQ86SG5 101 aa9.74□□□□□ -0.85
NEDD8-208ENST00000560427 TMEM217Q8N7C4 229 aa9.74□□□□□ -0.85
NEDD8-208ENST00000560427 PBDC1Q9BVG4 233 aa9.74□□□□□ -0.85
NEDD8-208ENST00000560427 UQCC1Q9NVA1 299 aa9.74□□□□□ -0.85
NEDD8-208ENST00000560427 OR5AC2Q9NZP5 309 aa9.74□□□□□ -0.85
NEDD8-208ENST00000560427 IGHV3OR16-13A0A075B7E8 117 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 IGHV3-74A0A0B4J1X5 117 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 H0YIZ8 118 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 BUB3O43684 328 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 MPDU1O75352 247 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 DFFBO76075 338 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 CD7P09564 240 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 GIPP09681 153 aaPredicted RBP9.73□□□□□ -0.85
NEDD8-208ENST00000560427 PLP1P60201 277 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 EWSR1Q01844 656 aaKnown RBP eCLIP9.73□□□□□ -0.85
NEDD8-208ENST00000560427 FGL1Q08830 312 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 OR2F1Q13607 317 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 PXDC1Q5TGL8 231 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 C16orf54Q6UWD8 224 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 OR11H7Q8NGC8 314 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 GLMPQ8WWB7 406 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 C19orf73Q9NVV2 129 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 FBXL17Q9UF56 701 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 RNF24Q9Y225 148 aa9.73□□□□□ -0.85
NEDD8-208ENST00000560427 IGHV3-66A0A0C4DH42 116 aa9.72□□□□□ -0.85
NEDD8-208ENST00000560427 OR11H12B2RN74 326 aa9.72□□□□□ -0.85
NEDD8-208ENST00000560427 FRMD6-AS1P0C7T7 363 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms