RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 BPIFB3P59826 476 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 RPL24P83731 157 aaKnown RBP9.2□□□□□ -0.94
LDLR-208ENST00000558518 OCIAD2Q56VL3 154 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 EXOC3-AS1Q8N2X6 119 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 WDR31Q8NA23 367 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 TMEM14BQ9NUH8 114 aa9.2□□□□□ -0.94
LDLR-208ENST00000558518 SPENQ96T58 3664 aaKnown RBP9.2□□□□□ -0.94
LDLR-208ENST00000558518 BDP1A6H8Y1 2624 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 TRAV8-6A0A0B4J262 113 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 C2orf70A6NJV1 201 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 H3BUT2 72 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 RBP4P02753 201 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 CD69Q07108 199 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 Q6ZT83 130 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 SRSF12Q8WXF0 261 aaKnown RBP9.19□□□□□ -0.94
LDLR-208ENST00000558518 IGHV1-18A0A0C4DH31 117 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 IGHV2-70DA0A0C4DH43 119 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 UPK2O00526 184 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 APOHP02749 345 aaPredicted RBP9.19□□□□□ -0.94
LDLR-208ENST00000558518 COX19Q49B96 90 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 FA2HQ7L5A8 372 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 SMIM15Q7Z3B0 74 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 ZNF329Q86UD4 541 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 BPIFA4PQ86YQ2 179 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 OR4F17Q8NGA8 305 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 CCL17Q92583 94 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 ZFHX2Q9C0A1 2572 aaPredicted RBP9.19□□□□□ -0.94
LDLR-208ENST00000558518 K7EMI3 77 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 CT45A6P0DMU7 189 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 CT45A5P0DMU8 189 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 CT45A7P0DMV0 189 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 RNASE2P10153 161 aaKnown RBP9.19□□□□□ -0.94
LDLR-208ENST00000558518 TNFAIP6P98066 277 aaPredicted RBP9.19□□□□□ -0.94
LDLR-208ENST00000558518 PRCDQ00LT1 54 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 MRPL52Q86TS9 123 aaKnown RBP9.19□□□□□ -0.94
LDLR-208ENST00000558518 FAM90A1Q86YD7 464 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 TMEM178AQ8NBL3 297 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 TPSG1Q9NRR2 321 aa9.19□□□□□ -0.94
LDLR-208ENST00000558518 KBTBD11-OT1A0A1B0GTJ5 212 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 C7orf71A4D174 169 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 TAX1BP3O14907 124 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 NBEAP1P0C6P0 100 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 BVES-AS1Q5T3Y7 98 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 IGFBPL1Q8WX77 278 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 IGF2BP2-AS1Q96M15 143 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 C18orf15Q96N68 181 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 SLC25A10Q9UBX3 287 aaPredicted RBP9.18□□□□□ -0.94
LDLR-208ENST00000558518 FOXA2Q9Y261 457 aaPredicted RBP9.18□□□□□ -0.94
LDLR-208ENST00000558518 A0A1W2PNU3 283 aaPredicted RBP9.18□□□□□ -0.94
LDLR-208ENST00000558518 ACP1P24666 158 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 PLGLAQ15195 96 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 C17orf58Q2M2W7 97 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 S100A7AQ86SG5 101 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 FER1L6-AS2Q96M78 137 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 COL6A6A6NMZ7 2263 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 IGHV3OR16-8A0A075B7F1 116 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 A8MWL6 223 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 SRRM5B3KS81 715 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 KIR2DS2P43631 304 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 ARL6IP6Q8N6S5 226 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 OR1L8Q8NGR8 309 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 ARHGAP32A7KAX9 2087 aa9.18□□□□□ -0.94
LDLR-208ENST00000558518 RPP21Q9H633 154 aaKnown RBP9.17□□□□□ -0.94
LDLR-208ENST00000558518 ZNF430Q9H8G1 570 aaPredicted RBP9.17□□□□□ -0.94
LDLR-208ENST00000558518 EPDR1Q9UM22 224 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 PROCRQ9UNN8 238 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 LY96Q9Y6Y9 160 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.17□□□□□ -0.94
LDLR-208ENST00000558518 TRGV8A0A0C4DH27 118 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 H0YJW9 148 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 GPR183P32249 361 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 KIR2DL2P43627 348 aaPredicted RBP9.17□□□□□ -0.94
LDLR-208ENST00000558518 CDKN1BP46527 198 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 TMEM249Q2WGJ8 235 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 RUSC1-AS1Q66K80 236 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 PATE2Q6UY27 113 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 SARAFQ96BY9 339 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 THYN1Q9P016 225 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 TRAV30A0A087WSZ9 112 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 DLL1O00548 723 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 TMPRSS3P57727 454 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 RPRMLQ8N4K4 120 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 FAM222BQ8WU58 562 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 FAM167A-AS1Q96KT0 104 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 MRPL27Q9P0M9 148 aaKnown RBP9.17□□□□□ -0.94
LDLR-208ENST00000558518 ZNF257Q9Y2Q1 563 aa9.17□□□□□ -0.94
LDLR-208ENST00000558518 ZNF207O43670 478 aaKnown RBP9.16□□□□□ -0.94
LDLR-208ENST00000558518 WT1-ASQ06250 92 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 C12orf54Q6X4T0 127 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 GTSF1Q8WW33 167 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 MAP1AP78559 2803 aaPredicted RBP9.16□□□□□ -0.94
LDLR-208ENST00000558518 FAM231BA6NCW3 169 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 HLA-DRB1P01911 266 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 PRR7Q8TB68 274 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 URB1-AS1Q96HZ7 61 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 IGHV3-35A0A0C4DH35 117 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 K7ERU9 68 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 ITGB1BP1O14713 200 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 FAM106CPP0CH98 169 aa9.16□□□□□ -0.94
LDLR-208ENST00000558518 FAM106AQ4KMX7 169 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms