RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 MMD2Q8IY49 270 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 HIST3H2BBQ8N257 126 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 VSTM2AQ8TAG5 236 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 CORO2AQ92828 525 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 SAMD10Q9BYL1 202 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 OR51M1Q9H341 326 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 KCNIP2Q9NS61 270 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 SIGLEC9Q9Y336 463 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 AMMECR1Q9Y4X0 333 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-215ENST00000552823 NACAE9PAV3 2078 aa4.48□□□□□ -1.69
LIMA1-215ENST00000552823 USP24Q9UPU5 2620 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 A0A1W2PN81 502 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 B4DEV8 164 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 M0R3E3 92 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 ISLRO14498 428 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 IGLV2-23P01705 113 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 AMY1AP04745 511 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 PSG1P11464 419 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 ADMP35318 185 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 PRR20EP86478 221 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 PRR20CP86479 221 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 PRR20DP86480 221 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 PRR20BP86481 221 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 PRR20AP86496 221 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 VWC2Q2TAL6 325 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 TMEM177Q53S58 311 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 FAM120AOSQ5T036 256 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 SP5Q6BEB4 398 aaPredicted RBP4.47□□□□□ -1.69
LIMA1-215ENST00000552823 TCF24Q7RTU0 167 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 PDPNQ86YL7 162 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 DYNAPQ8N1N2 210 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 FAM19A2Q8N3H0 131 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 TMEM167AQ8TBQ9 72 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 BPESC1Q9GZL8 116 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 SRD5A3Q9H8P0 318 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 JKAMPQ9P055 326 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 CSMD2Q7Z408 3487 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 IQCJQ1A5X6 159 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 C2orf83Q53S99 150 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 UNQ6494/PRO21346Q6UXR6 183 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 CENPVQ7Z7K6 275 aaPredicted RBP4.47□□□□□ -1.69
LIMA1-215ENST00000552823 PRNTQ86SH4 94 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 LINC00469Q8N7U9 141 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 OR1P1Q8NH06 330 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 YPEL4Q96NS1 127 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 RBM14Q96PK6 669 aaKnown RBP4.47□□□□□ -1.69
LIMA1-215ENST00000552823 HIST1H2BLQ99880 126 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 CTDSP1Q9GZU7 261 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 DPM3Q9P2X0 92 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 HECTD1Q9ULT8 2610 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 A0A1B0GWJ7 208 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 SEC14L6B5MCN3 397 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 M0QZ24 198 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 HYPMO75409 117 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 S100A8P05109 93 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 IL4P05112 153 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 CSN3P07498 182 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 MC5RP33032 325 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 CNN1P51911 297 aaKnown RBP4.47□□□□□ -1.69
LIMA1-215ENST00000552823 FOXA3P55318 350 aaPredicted RBP4.47□□□□□ -1.69
LIMA1-215ENST00000552823 TCTAP57738 103 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 RPL19P84098 196 aaKnown RBP4.47□□□□□ -1.69
LIMA1-215ENST00000552823 BATFQ16520 125 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 ZNF841Q6ZN19 808 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 LCNL1Q6ZST4 164 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 GOLT1AQ6ZVE7 132 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 ST6GALNAC3Q8NDV1 305 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 ST6GALNAC6Q969X2 333 aa4.47□□□□□ -1.69
LIMA1-215ENST00000552823 IGLC7A0M8Q6 106 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 OR2T8A6NH00 312 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 A6NNC1 897 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 HAX1O00165 279 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 TGOLN2O43493 480 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 GNG7O60262 68 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 AMBPP02760 352 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 NBEAP1P0C6P0 100 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 HIST1H1BP16401 226 aaKnown RBP4.46□□□□□ -1.7
LIMA1-215ENST00000552823 DLX6P56179 175 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 KRTDAPP60985 99 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 IBA57Q5T440 356 aaKnown RBP4.46□□□□□ -1.7
LIMA1-215ENST00000552823 VMO1Q7Z5L0 202 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 ATOH7Q8N100 152 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 OR2D3Q8NGH3 330 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 OR1L4Q8NGR5 311 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 ANAPC16Q96DE5 110 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 RASL11BQ9BPW5 248 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 SLC25A2Q9BXI2 301 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 MRPL18Q9H0U6 180 aaKnown RBP4.46□□□□□ -1.7
LIMA1-215ENST00000552823 TMEM167BQ9NRX6 74 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 CBLN4Q9NTU7 201 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 CELSR2Q9HCU4 2923 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 LINC01548A6NM66 108 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 G3V318 75 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 GATCO43716 136 aaKnown RBP4.46□□□□□ -1.7
LIMA1-215ENST00000552823 IGHV2-70P01814 119 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 COL8A1P27658 744 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 RPL15P61313 204 aaKnown RBP4.46□□□□□ -1.7
LIMA1-215ENST00000552823 CIARTQ8N365 385 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-215ENST00000552823 CMTM2Q8TAZ6 248 aa4.46□□□□□ -1.7
LIMA1-215ENST00000552823 ZNF596Q8TC21 504 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms