RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ZFP92A6NM28 416 aa11.91□□□□□ -0.5
VPS29-207ENST00000549970 BUB3O43684 328 aa11.91□□□□□ -0.5
VPS29-207ENST00000549970 PITX3O75364 302 aa11.91□□□□□ -0.5
VPS29-207ENST00000549970 GIG44P09565 113 aaPredicted RBP11.91□□□□□ -0.5
VPS29-207ENST00000549970 C4BPBP20851 252 aa11.91□□□□□ -0.5
VPS29-207ENST00000549970 GAMTQ14353 236 aa11.91□□□□□ -0.5
VPS29-207ENST00000549970 SIGLEC15Q6ZMC9 328 aa11.91□□□□□ -0.5
VPS29-207ENST00000549970 CCDC190Q86UF4 302 aa11.91□□□□□ -0.5
VPS29-207ENST00000549970 C11orf45Q8TAV5 145 aa11.91□□□□□ -0.5
VPS29-207ENST00000549970 RNF125Q96EQ8 232 aa11.91□□□□□ -0.5
VPS29-207ENST00000549970 SLC25A21Q9BQT8 299 aaPredicted RBP11.91□□□□□ -0.5
VPS29-207ENST00000549970 FBXL17Q9UF56 701 aa11.91□□□□□ -0.5
VPS29-207ENST00000549970 PAIP2BQ9ULR5 123 aaKnown RBP11.91□□□□□ -0.5
VPS29-207ENST00000549970 SPP1P10451 314 aa11.9□□□□□ -0.5
VPS29-207ENST00000549970 GPX4P36969 197 aaPredicted RBP11.9□□□□□ -0.5
VPS29-207ENST00000549970 ATP5IP56385 69 aaPredicted RBP11.9□□□□□ -0.5
VPS29-207ENST00000549970 ZNF90Q03938 601 aa11.9□□□□□ -0.5
VPS29-207ENST00000549970 PPP1R1AQ13522 171 aa11.9□□□□□ -0.5
VPS29-207ENST00000549970 MORN3Q6PF18 240 aaPredicted RBP11.9□□□□□ -0.5
VPS29-207ENST00000549970 LRTM2Q8N967 370 aa11.9□□□□□ -0.5
VPS29-207ENST00000549970 MFFQ9GZY8 342 aa11.9□□□□□ -0.5
VPS29-207ENST00000549970 RBM38Q9H0Z9 239 aaKnown RBP11.9□□□□□ -0.5
VPS29-207ENST00000549970 NRN1Q9NPD7 142 aa11.9□□□□□ -0.5
VPS29-207ENST00000549970 IGKV1D-37A0A075B6S9 117 aa11.89□□□□□ -0.51
VPS29-207ENST00000549970 FAM90A26D6RGX4 464 aa11.89□□□□□ -0.51
VPS29-207ENST00000549970 SFT2D2O95562 160 aa11.89□□□□□ -0.51
VPS29-207ENST00000549970 SNRPD3P62318 126 aaKnown RBP11.89□□□□□ -0.51
VPS29-207ENST00000549970 RAB11AP62491 216 aa11.89□□□□□ -0.51
VPS29-207ENST00000549970 CENPSQ8N2Z9 138 aa11.89□□□□□ -0.51
VPS29-207ENST00000549970 DEDD2Q8WXF8 326 aa11.89□□□□□ -0.51
VPS29-207ENST00000549970 RAB40CQ96S21 281 aa11.89□□□□□ -0.51
VPS29-207ENST00000549970 CLEC5AQ9NY25 188 aa11.89□□□□□ -0.51
VPS29-207ENST00000549970 TMED3Q9Y3Q3 217 aa11.89□□□□□ -0.51
VPS29-207ENST00000549970 HOXB5P09067 269 aa11.88□□□□□ -0.51
VPS29-207ENST00000549970 SLC25A6P12236 298 aa11.88□□□□□ -0.51
VPS29-207ENST00000549970 LYZP61626 148 aa11.88□□□□□ -0.51
VPS29-207ENST00000549970 TMEM41BQ5BJD5 291 aa11.88□□□□□ -0.51
VPS29-207ENST00000549970 SPANXN2Q5MJ10 180 aa11.88□□□□□ -0.51
VPS29-207ENST00000549970 Q8NAQ8 132 aa11.88□□□□□ -0.51
VPS29-207ENST00000549970 SRRQ9GZT4 340 aa11.88□□□□□ -0.51
VPS29-207ENST00000549970 MAGT1Q9H0U3 335 aa11.88□□□□□ -0.51
VPS29-207ENST00000549970 VPS13DQ5THJ4 4388 aa11.88□□□□□ -0.51
VPS29-207ENST00000549970 MED6O75586 246 aa11.87□□□□□ -0.51
VPS29-207ENST00000549970 NUP62P37198 522 aaPredicted RBP11.87□□□□□ -0.51
VPS29-207ENST00000549970 OR2F1Q13607 317 aa11.87□□□□□ -0.51
VPS29-207ENST00000549970 OR8G2PQ6IF36 304 aa11.87□□□□□ -0.51
VPS29-207ENST00000549970 FRAS1Q86XX4 4008 aa11.87□□□□□ -0.51
VPS29-207ENST00000549970 IGHV4-28A0A0C4DH34 117 aa11.86□□□□□ -0.51
VPS29-207ENST00000549970 WRBO00258 174 aa11.86□□□□□ -0.51
VPS29-207ENST00000549970 FABP1P07148 127 aa11.86□□□□□ -0.51
VPS29-207ENST00000549970 INPP1P49441 399 aa11.86□□□□□ -0.51
VPS29-207ENST00000549970 GGNBP1Q5YKI7 109 aa11.86□□□□□ -0.51
VPS29-207ENST00000549970 CIB3Q96Q77 187 aaPredicted RBP11.86□□□□□ -0.51
VPS29-207ENST00000549970 SEPSECSQ9HD40 501 aaKnown RBP11.86□□□□□ -0.51
VPS29-207ENST00000549970 PFDN2Q9UHV9 154 aa11.86□□□□□ -0.51
VPS29-207ENST00000549970 ZNF705EA8MWA4 302 aaPredicted RBP11.85□□□□□ -0.51
VPS29-207ENST00000549970 SNRPGP15A8MWD9 76 aa11.85□□□□□ -0.51
VPS29-207ENST00000549970 ZNF701M0R085 212 aaPredicted RBP11.85□□□□□ -0.51
VPS29-207ENST00000549970 SYNGR2O43760 224 aa11.85□□□□□ -0.51
VPS29-207ENST00000549970 RBMY1A1P0DJD3 496 aaKnown RBP11.85□□□□□ -0.51
VPS29-207ENST00000549970 RBMY1CP0DJD4 496 aa11.85□□□□□ -0.51
VPS29-207ENST00000549970 MIFP14174 115 aa11.85□□□□□ -0.51
VPS29-207ENST00000549970 RPP30P78346 268 aaKnown RBP11.85□□□□□ -0.51
VPS29-207ENST00000549970 RBMY1FQ15415 496 aaKnown RBP11.85□□□□□ -0.51
VPS29-207ENST00000549970 BAK1Q16611 211 aa11.85□□□□□ -0.51
VPS29-207ENST00000549970 TRIQKQ629K1 86 aa11.85□□□□□ -0.51
VPS29-207ENST00000549970 PPP1R14BQ96C90 147 aa11.85□□□□□ -0.51
VPS29-207ENST00000549970 TRGV9Q99603 122 aa11.85□□□□□ -0.51
VPS29-207ENST00000549970 TBC1D24Q9ULP9 559 aa11.85□□□□□ -0.51
VPS29-207ENST00000549970 X6R8D5 127 aa11.85□□□□□ -0.51
VPS29-207ENST00000549970 DNAH6Q9C0G6 4158 aa11.85□□□□□ -0.51
VPS29-207ENST00000549970 IGKV1OR2-108A0A075B7D4 117 aa11.84□□□□□ -0.51
VPS29-207ENST00000549970 LINC00854A0A1B0GVQ3 168 aa11.84□□□□□ -0.51
VPS29-207ENST00000549970 H3BP45 60 aa11.84□□□□□ -0.51
VPS29-207ENST00000549970 SPANXN5Q5MJ07 72 aa11.84□□□□□ -0.51
VPS29-207ENST00000549970 GSG1LQ6UXU4 331 aa11.84□□□□□ -0.51
VPS29-207ENST00000549970 CSNK1G2-AS1Q8NCQ2 148 aa11.84□□□□□ -0.51
VPS29-207ENST00000549970 LINC00052Q96N35 136 aa11.84□□□□□ -0.51
VPS29-207ENST00000549970 WDR12Q9GZL7 423 aaKnown RBP11.84□□□□□ -0.51
VPS29-207ENST00000549970 DNAH10Q8IVF4 4471 aa11.83□□□□□ -0.52
VPS29-207ENST00000549970 C9orf170A2RU37 121 aa11.83□□□□□ -0.52
VPS29-207ENST00000549970 NAP1L6A6NFF2 107 aa11.83□□□□□ -0.52
VPS29-207ENST00000549970 H3BMM0 161 aa11.83□□□□□ -0.52
VPS29-207ENST00000549970 ADAP1O75689 374 aa11.83□□□□□ -0.52
VPS29-207ENST00000549970 DEFB1P60022 68 aa11.83□□□□□ -0.52
VPS29-207ENST00000549970 UBE2MP61081 183 aaKnown RBP11.83□□□□□ -0.52
VPS29-207ENST00000549970 NUTF2P61970 127 aaKnown RBP11.83□□□□□ -0.52
VPS29-207ENST00000549970 THAP8Q8NA92 274 aa11.83□□□□□ -0.52
VPS29-207ENST00000549970 C2CD4CQ8TF44 421 aa11.83□□□□□ -0.52
VPS29-207ENST00000549970 XCL2Q9UBD3 114 aa11.83□□□□□ -0.52
VPS29-207ENST00000549970 FLVCR2Q9UPI3 526 aa11.83□□□□□ -0.52
VPS29-207ENST00000549970 ELOA3CA0A087WX78 387 aaPredicted RBP11.82□□□□□ -0.52
VPS29-207ENST00000549970 PRSS46E5RG02 174 aa11.82□□□□□ -0.52
VPS29-207ENST00000549970 DEDDO75618 318 aa11.82□□□□□ -0.52
VPS29-207ENST00000549970 NDUFB6O95139 128 aa11.82□□□□□ -0.52
VPS29-207ENST00000549970 HLA-DRB4P13762 266 aa11.82□□□□□ -0.52
VPS29-207ENST00000549970 ID1P41134 155 aa11.82□□□□□ -0.52
VPS29-207ENST00000549970 NKX2-1P43699 371 aaPredicted RBP11.82□□□□□ -0.52
VPS29-207ENST00000549970 C1orf194Q5T5A4 169 aa11.82□□□□□ -0.52
VPS29-207ENST00000549970 GDF5OSQ5U4N7 250 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms