RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 HSPB11Q9Y547 144 aa13.36□□□□□ -0.27
CLSTN3-210ENST00000540931 C2orf70A6NJV1 201 aa13.35□□□□□ -0.27
CLSTN3-210ENST00000540931 CBLN1P23435 193 aa13.35□□□□□ -0.27
CLSTN3-210ENST00000540931 EIF2B2P49770 351 aaKnown RBP13.35□□□□□ -0.27
CLSTN3-210ENST00000540931 AP2S1P53680 142 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-210ENST00000540931 LAMTOR1Q6IAA8 161 aa13.35□□□□□ -0.27
CLSTN3-210ENST00000540931 LCN12Q6JVE5 192 aa13.35□□□□□ -0.27
CLSTN3-210ENST00000540931 TOMM20LQ6UXN7 152 aa13.35□□□□□ -0.27
CLSTN3-210ENST00000540931 OR5C1Q8NGR4 320 aa13.35□□□□□ -0.27
CLSTN3-210ENST00000540931 AQP10Q96PS8 301 aa13.35□□□□□ -0.27
CLSTN3-210ENST00000540931 TRAV25A0A0B4J276 109 aa13.34□□□□□ -0.27
CLSTN3-210ENST00000540931 IFNA5P01569 189 aa13.34□□□□□ -0.27
CLSTN3-210ENST00000540931 CSN3P07498 182 aa13.34□□□□□ -0.27
CLSTN3-210ENST00000540931 PSG1P11464 419 aa13.34□□□□□ -0.27
CLSTN3-210ENST00000540931 FOLR2P14207 255 aa13.34□□□□□ -0.27
CLSTN3-210ENST00000540931 IGLL1P15814 213 aa13.34□□□□□ -0.27
CLSTN3-210ENST00000540931 ZNF266Q14584 549 aa13.34□□□□□ -0.27
CLSTN3-210ENST00000540931 LSM4Q9Y4Z0 139 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-210ENST00000540931 PRKDCP78527 4128 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-210ENST00000540931 IGHV3-35A0A0C4DH35 117 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 TMEM213A2RRL7 107 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 C17orf112F2Z3M2 114 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 IGLV1-51P01701 117 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 IL4P05112 153 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 NHLH2Q02577 135 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 SAMD5Q5TGI4 173 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 UNQ9165/PRO28630Q6UXU0 137 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 Q6ZRG5 221 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 CYP2G1PQ6ZSU1 146 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 ZNF709Q8N972 641 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 RNF125Q96EQ8 232 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 ATP5SQ99766 215 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 PARD6GQ9BYG4 376 aaPredicted RBP13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 ZFAND3Q9H8U3 227 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 RABAC1Q9UI14 185 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 WDR83OSQ9Y284 106 aa13.33□□□□□ -0.28
CLSTN3-210ENST00000540931 IGKV1D-37A0A075B6S9 117 aa13.32□□□□□ -0.28
CLSTN3-210ENST00000540931 IGHV7-4-1A0A0J9YVY3 117 aa13.32□□□□□ -0.28
CLSTN3-210ENST00000540931 WI2-2373I1.2A0A1W2PRP0 233 aa13.32□□□□□ -0.28
CLSTN3-210ENST00000540931 TAAR5O14804 337 aa13.32□□□□□ -0.28
CLSTN3-210ENST00000540931 CCNKO75909 580 aa13.32□□□□□ -0.28
CLSTN3-210ENST00000540931 HNRNPCP07910 306 aaKnown RBP eCLIP13.32□□□□□ -0.28
CLSTN3-210ENST00000540931 CRYBB3P26998 211 aa13.32□□□□□ -0.28
CLSTN3-210ENST00000540931 ARL16Q0P5N6 197 aa13.32□□□□□ -0.28
CLSTN3-210ENST00000540931 IL34Q6ZMJ4 242 aa13.32□□□□□ -0.28
CLSTN3-210ENST00000540931 HAPLN4Q86UW8 402 aa13.32□□□□□ -0.28
CLSTN3-210ENST00000540931 SCGB1C1Q8TD33 95 aa13.32□□□□□ -0.28
CLSTN3-210ENST00000540931 SMPXQ9UHP9 88 aa13.32□□□□□ -0.28
CLSTN3-210ENST00000540931 IGKV1OR2-108A0A075B7D4 117 aa13.31□□□□□ -0.28
CLSTN3-210ENST00000540931 ELOA3CA0A087WX78 387 aaPredicted RBP13.31□□□□□ -0.28
CLSTN3-210ENST00000540931 FXYD6-FXYD2A0A087WZ82 144 aa13.31□□□□□ -0.28
CLSTN3-210ENST00000540931 HMSDA8MTL9 139 aa13.31□□□□□ -0.28
CLSTN3-210ENST00000540931 CAMLGP49069 296 aa13.31□□□□□ -0.28
CLSTN3-210ENST00000540931 PLP1P60201 277 aa13.31□□□□□ -0.28
CLSTN3-210ENST00000540931 EGFEM1PQ0D2K5 195 aa13.31□□□□□ -0.28
CLSTN3-210ENST00000540931 TM4SF20Q53R12 229 aa13.31□□□□□ -0.28
CLSTN3-210ENST00000540931 BTNL8Q6UX41 500 aa13.31□□□□□ -0.28
CLSTN3-210ENST00000540931 TCTE3Q8IZS6 198 aa13.31□□□□□ -0.28
CLSTN3-210ENST00000540931 FBXL17Q9UF56 701 aa13.31□□□□□ -0.28
CLSTN3-210ENST00000540931 TNFSF18Q9UNG2 199 aa13.31□□□□□ -0.28
CLSTN3-210ENST00000540931 AGPAT2O15120 278 aa13.3□□□□□ -0.28
CLSTN3-210ENST00000540931 RPL29P47914 159 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-210ENST00000540931 PAFAH1B2P68402 229 aa13.3□□□□□ -0.28
CLSTN3-210ENST00000540931 ZNF90Q03938 601 aa13.3□□□□□ -0.28
CLSTN3-210ENST00000540931 OR2F1Q13607 317 aa13.3□□□□□ -0.28
CLSTN3-210ENST00000540931 C1orf194Q5T5A4 169 aa13.3□□□□□ -0.28
CLSTN3-210ENST00000540931 KPRPQ5T749 579 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-210ENST00000540931 RBPMS2Q6ZRY4 209 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-210ENST00000540931 AKAP14Q86UN6 197 aa13.3□□□□□ -0.28
CLSTN3-210ENST00000540931 PFDN5Q99471 154 aa13.3□□□□□ -0.28
CLSTN3-210ENST00000540931 BORCS7-ASMTA0A0B4J1R7 106 aa13.29□□□□□ -0.28
CLSTN3-210ENST00000540931 UBE2L5PA0A1B0GUS4 154 aa13.29□□□□□ -0.28
CLSTN3-210ENST00000540931 HELTA6NFD8 242 aa13.29□□□□□ -0.28
CLSTN3-210ENST00000540931 FGF7P21781 194 aa13.29□□□□□ -0.28
CLSTN3-210ENST00000540931 ZNF345Q14585 488 aa13.29□□□□□ -0.28
CLSTN3-210ENST00000540931 DEFB114Q30KQ6 69 aa13.29□□□□□ -0.28
CLSTN3-210ENST00000540931 OXLD1Q5BKU9 147 aa13.29□□□□□ -0.28
CLSTN3-210ENST00000540931 OR1L4Q8NGR5 311 aa13.29□□□□□ -0.28
CLSTN3-210ENST00000540931 GPR82Q96P67 336 aa13.29□□□□□ -0.28
CLSTN3-210ENST00000540931 RHPN1-AS1Q9BWJ2 59 aa13.29□□□□□ -0.28
CLSTN3-210ENST00000540931 VSIRQ9H7M9 311 aa13.29□□□□□ -0.28
CLSTN3-210ENST00000540931 CMYA5Q8N3K9 4069 aa13.28□□□□□ -0.28
CLSTN3-210ENST00000540931 A0A0D9SG52 128 aa13.28□□□□□ -0.28
CLSTN3-210ENST00000540931 HYPMO75409 117 aa13.28□□□□□ -0.28
CLSTN3-210ENST00000540931 LINC00869P0C866 280 aa13.28□□□□□ -0.28
CLSTN3-210ENST00000540931 CMC4P56277 68 aaPredicted RBP13.28□□□□□ -0.28
CLSTN3-210ENST00000540931 LYZP61626 148 aa13.28□□□□□ -0.28
CLSTN3-210ENST00000540931 CLINT1Q14677 625 aa13.28□□□□□ -0.28
CLSTN3-210ENST00000540931 PPP1R14BQ96C90 147 aa13.28□□□□□ -0.28
CLSTN3-210ENST00000540931 NEURL2Q9BR09 285 aa13.28□□□□□ -0.28
CLSTN3-210ENST00000540931 PBDC1Q9BVG4 233 aa13.28□□□□□ -0.28
CLSTN3-210ENST00000540931 WDR61Q9GZS3 305 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-210ENST00000540931 CHEK1O14757 476 aa13.27□□□□□ -0.29
CLSTN3-210ENST00000540931 SAMD13Q5VXD3 122 aa13.27□□□□□ -0.29
CLSTN3-210ENST00000540931 SPAG8Q99932 426 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-210ENST00000540931 NPCDR1Q9BY65 106 aa13.27□□□□□ -0.29
CLSTN3-210ENST00000540931 MFFQ9GZY8 342 aa13.27□□□□□ -0.29
CLSTN3-210ENST00000540931 HIGD1AQ9Y241 93 aa13.27□□□□□ -0.29
CLSTN3-210ENST00000540931 ZNF256Q9Y2P7 627 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-210ENST00000540931 U3KQE9 123 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms