RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 PET100P0DJ07 73 aa10.75□□□□□ -0.69
NUP54-216ENST00000514901 GUCA2BQ16661 112 aa10.75□□□□□ -0.69
NUP54-216ENST00000514901 STX12Q86Y82 276 aa10.75□□□□□ -0.69
NUP54-216ENST00000514901 TMEM61Q8N0U2 210 aa10.75□□□□□ -0.69
NUP54-216ENST00000514901 PPP1R1CQ8WVI7 109 aa10.75□□□□□ -0.69
NUP54-216ENST00000514901 SLC25A31Q9H0C2 315 aa10.75□□□□□ -0.69
NUP54-216ENST00000514901 VSIRQ9H7M9 311 aa10.75□□□□□ -0.69
NUP54-216ENST00000514901 LSM4Q9Y4Z0 139 aaKnown RBP10.75□□□□□ -0.69
NUP54-216ENST00000514901 FAM24AA6NFZ4 105 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 CCNKO75909 580 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 HNRNPCP07910 306 aaKnown RBP eCLIP10.74□□□□□ -0.69
NUP54-216ENST00000514901 S100A11P31949 105 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 NUP62P37198 522 aaPredicted RBP10.74□□□□□ -0.69
NUP54-216ENST00000514901 P2RY1P47900 373 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 SULT1A1P50225 295 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 RRAS2P62070 204 aaPredicted RBP10.74□□□□□ -0.69
NUP54-216ENST00000514901 HBG1P69891 147 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 HBG2P69892 147 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 ZNF90Q03938 601 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 TMEM252Q8N6L7 170 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 ASB13Q8WXK3 278 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 RNF125Q96EQ8 232 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 WDR89Q96FK6 387 aaPredicted RBP10.74□□□□□ -0.69
NUP54-216ENST00000514901 GRAMD2BQ96HH9 432 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 SPAG8Q99932 426 aaPredicted RBP10.74□□□□□ -0.69
NUP54-216ENST00000514901 RABAC1Q9UI14 185 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 SMAD5-AS1Q9Y6J3 95 aa10.74□□□□□ -0.69
NUP54-216ENST00000514901 IGKV1OR2-108A0A075B7D4 117 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 IGHV3-49A0A0A0MS15 119 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 CST7O76096 145 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 S100A7P31151 101 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 SELENOTP62341 195 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 SLC38A11Q08AI6 406 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 ARL16Q0P5N6 197 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 ATP6V1FQ16864 119 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 LRRC37A5PQ49AS3 106 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 TEPPQ6URK8 271 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 BPIFCQ8NFQ6 507 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 ST8SIA2Q92186 375 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 RNF2Q99496 336 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 U3KQE9 123 aa10.73□□□□□ -0.69
NUP54-216ENST00000514901 MPC2O95563 127 aa10.72□□□□□ -0.69
NUP54-216ENST00000514901 EIF2B2P49770 351 aaKnown RBP10.72□□□□□ -0.69
NUP54-216ENST00000514901 PAFAH1B2P68402 229 aa10.72□□□□□ -0.69
NUP54-216ENST00000514901 FCN2Q15485 313 aa10.72□□□□□ -0.69
NUP54-216ENST00000514901 USF2Q15853 346 aaPredicted RBP10.72□□□□□ -0.69
NUP54-216ENST00000514901 FAM90A2PQ658T7 463 aa10.72□□□□□ -0.69
NUP54-216ENST00000514901 Q8N1Y9 231 aa10.72□□□□□ -0.69
NUP54-216ENST00000514901 IGHV3OR16-13A0A075B7E8 117 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 IGHV3-74A0A0B4J1X5 117 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 IGSF23A1L1A6 192 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 OR4C46A6NHA9 309 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 H0YIZ8 118 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 APOHP02749 345 aaPredicted RBP10.71□□□□□ -0.69
NUP54-216ENST00000514901 CXCL3P19876 107 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 AP2S1P53680 142 aaPredicted RBP10.71□□□□□ -0.69
NUP54-216ENST00000514901 CMC4P56277 68 aaPredicted RBP10.71□□□□□ -0.69
NUP54-216ENST00000514901 BAXQ07812 192 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 OR2F1Q13607 317 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 RAB31Q13636 194 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 CYP2G1PQ6ZSU1 146 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 TCF24Q7RTU0 167 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 LILRB2Q8N423 598 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 TMEM217Q8N7C4 229 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 NEURL2Q9BR09 285 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 RNF126Q9BV68 326 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 PBDC1Q9BVG4 233 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 UQCC1Q9NVA1 299 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 OR5AC2Q9NZP5 309 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 SLC45A2Q9UMX9 530 aa10.71□□□□□ -0.69
NUP54-216ENST00000514901 HELTA6NFD8 242 aa10.7□□□□□ -0.7
NUP54-216ENST00000514901 A8MZ25 164 aa10.7□□□□□ -0.7
NUP54-216ENST00000514901 DFFBO76075 338 aa10.7□□□□□ -0.7
NUP54-216ENST00000514901 CD81P60033 236 aa10.7□□□□□ -0.7
NUP54-216ENST00000514901 LYZP61626 148 aa10.7□□□□□ -0.7
NUP54-216ENST00000514901 VWC2Q2TAL6 325 aa10.7□□□□□ -0.7
NUP54-216ENST00000514901 C16orf54Q6UWD8 224 aa10.7□□□□□ -0.7
NUP54-216ENST00000514901 S100A7AQ86SG5 101 aa10.7□□□□□ -0.7
NUP54-216ENST00000514901 OR11H7Q8NGC8 314 aa10.7□□□□□ -0.7
NUP54-216ENST00000514901 THAP6Q8TBB0 222 aa10.7□□□□□ -0.7
NUP54-216ENST00000514901 TMEM147Q9BVK8 224 aa10.7□□□□□ -0.7
NUP54-216ENST00000514901 SELENOKQ9Y6D0 94 aa10.7□□□□□ -0.7
NUP54-216ENST00000514901 TRAV2A0A0B4J234 112 aa10.69□□□□□ -0.7
NUP54-216ENST00000514901 IGHV3-66A0A0C4DH42 116 aa10.69□□□□□ -0.7
NUP54-216ENST00000514901 BUB3O43684 328 aa10.69□□□□□ -0.7
NUP54-216ENST00000514901 GIPP09681 153 aaPredicted RBP10.69□□□□□ -0.7
NUP54-216ENST00000514901 PLP1P60201 277 aa10.69□□□□□ -0.7
NUP54-216ENST00000514901 RPL11P62913 178 aaKnown RBP10.69□□□□□ -0.7
NUP54-216ENST00000514901 EWSR1Q01844 656 aaKnown RBP eCLIP10.69□□□□□ -0.7
NUP54-216ENST00000514901 FGL1Q08830 312 aa10.69□□□□□ -0.7
NUP54-216ENST00000514901 C1orf194Q5T5A4 169 aa10.69□□□□□ -0.7
NUP54-216ENST00000514901 PXDC1Q5TGL8 231 aa10.69□□□□□ -0.7
NUP54-216ENST00000514901 ZNF546Q86UE3 836 aa10.69□□□□□ -0.7
NUP54-216ENST00000514901 DNASE2O00115 360 aaPredicted RBP10.68□□□□□ -0.7
NUP54-216ENST00000514901 CD7P09564 240 aa10.68□□□□□ -0.7
NUP54-216ENST00000514901 LYL1P12980 280 aa10.68□□□□□ -0.7
NUP54-216ENST00000514901 RAP2BP61225 183 aa10.68□□□□□ -0.7
NUP54-216ENST00000514901 NHLH2Q02577 135 aa10.68□□□□□ -0.7
NUP54-216ENST00000514901 GLMPQ8WWB7 406 aa10.68□□□□□ -0.7
NUP54-216ENST00000514901 PPP1R14BQ96C90 147 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms