RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ZNF841Q6ZN19 808 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 ZNF329Q86UD4 541 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 C11orf52Q96A22 123 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 CACNA1GO43497 2377 aa6.86□□□□□ -1.31
LIMCH1-216ENST00000512820 IGKV3-7A0A075B6H7 116 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 CCL21O00585 134 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 IGHV3-23P01764 117 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 TCRAP04437 139 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 PDLIM4P50479 330 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 C11orf53Q8IXP5 236 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 DPM3Q9P2X0 92 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 PSG8Q9UQ74 426 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 C7orf71A4D174 169 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 K7EN84 100 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 ORMDL3Q8N138 153 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 C18orf32Q8TCD1 76 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 M0QZ24 198 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 MGPP08493 103 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 PLP1P60201 277 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 C17orf58Q2M2W7 97 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 PMS2P5A8MQ11 134 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 NUPR1O60356 82 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 ZNF474Q6S9Z5 364 aaPredicted RBP6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 EXOC3-AS1Q8N2X6 119 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 LINC01560Q8TB33 94 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 TMEM131Q92545 1883 aa6.85□□□□□ -1.31
LIMCH1-216ENST00000512820 F2Z2F3 143 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 ZNF207O43670 478 aaKnown RBP6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 FAM106CPP0CH98 169 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 PSG1P11464 419 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 DUX4L9Q6RFH8 374 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 WFDC3Q8IUB2 231 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 FAM169BQ8N8A8 192 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 OR5AN1Q8NGI8 311 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 CADP27708 2225 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 LOC105371242A0A075B767 164 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 hDV102S1A0JD36 115 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 SRSF9Q13242 221 aaKnown RBP eCLIP6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 RNF125Q96EQ8 232 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 YPEL4Q96NS1 127 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 TRGV9Q99603 122 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 C21orf62Q9NYP8 219 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 MBD3L4A6NDZ8 208 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 MBD3L3A6NE82 208 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 MBD3L5A6NJ08 208 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 TEX43Q6ZNM6 134 aa6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 MBD3L2Q8NHZ7 208 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-216ENST00000512820 IGHV3OR16-8A0A075B7F1 116 aa6.84□□□□□ -1.32
LIMCH1-216ENST00000512820 TRAV8-1A0A0A6YYK1 113 aa6.84□□□□□ -1.32
LIMCH1-216ENST00000512820 NPSP0C0P6 89 aa6.84□□□□□ -1.32
LIMCH1-216ENST00000512820 TMPRSS3P57727 454 aa6.84□□□□□ -1.32
LIMCH1-216ENST00000512820 PRR20EP86478 221 aa6.84□□□□□ -1.32
LIMCH1-216ENST00000512820 PRR20CP86479 221 aa6.84□□□□□ -1.32
LIMCH1-216ENST00000512820 PRR20DP86480 221 aa6.84□□□□□ -1.32
LIMCH1-216ENST00000512820 PRR20BP86481 221 aa6.84□□□□□ -1.32
LIMCH1-216ENST00000512820 PRR20AP86496 221 aa6.84□□□□□ -1.32
LIMCH1-216ENST00000512820 ZNF295-AS1Q8N0V1 137 aa6.84□□□□□ -1.32
LIMCH1-216ENST00000512820 PKDREJQ9NTG1 2253 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 IGHV3OR16-13A0A075B7E8 117 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 IGHV3-74A0A0B4J1X5 117 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 IGLC2P0DOY2 106 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 IGLC3P0DOY3 106 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 PLA2G5P39877 138 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 LOXL3P58215 753 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 SLAQ13239 276 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 FER1L6-AS1Q8NA97 138 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 C16orf92Q96LL3 132 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 METTL26Q96S19 204 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 POLEQ07864 2286 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 TRBV20OR9-2A0A075B6H5 130 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 LYNX1G3V0Z9 82 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 SYS1-DBNDD2H3BUS1 97 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 LYNX1P0DP58 116 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 ZNF138P52744 262 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 HIST1H1AQ02539 215 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 Q1RN00 199 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 MPV17L2Q567V2 206 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 PVRIGQ6DKI7 326 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 DMRTC2Q8IXT2 367 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 RNASE6Q93091 150 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 TMEM178BH3BS89 294 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 IGHV1-8P0DP01 117 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 C5orf30Q96GV9 206 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 SLC25A2Q9BXI2 301 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 SLC25A39Q9BZJ4 359 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 NDUFA4L2Q9NRX3 87 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 LSM4Q9Y4Z0 139 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 KIR2DL5BA0A0G2JN68 375 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 KIR2DL5BA0A0G2JPC4 375 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 CD24P25063 80 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 TM4SF20Q53R12 229 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 ASPHD1Q5U4P2 390 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 KIR2DL5AQ8N109 375 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 ORAOV1Q8WV07 137 aa6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 MRPS16Q9Y3D3 137 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-216ENST00000512820 SMIM27A0A1W2PRY6 76 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 TPTE2P1Q5T6R2 138 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 KIR3DL3Q8N743 410 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 RCHY1Q96PM5 261 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 NBR2O15453 112 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms