RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 MED6O75586 246 aa14.18□□□□□ -0.14
USP40-217ENST00000496298 STHQ8IWL8 128 aa14.18□□□□□ -0.14
USP40-217ENST00000496298 OR51G1Q8NGK1 321 aa14.18□□□□□ -0.14
USP40-217ENST00000496298 SDHCQ99643 169 aaPredicted RBP14.18□□□□□ -0.14
USP40-217ENST00000496298 NUPR2A6NF83 97 aa14.17□□□□□ -0.14
USP40-217ENST00000496298 NDUFB6O95139 128 aa14.17□□□□□ -0.14
USP40-217ENST00000496298 CA1P00915 261 aaPredicted RBP14.17□□□□□ -0.14
USP40-217ENST00000496298 GIG44P09565 113 aaPredicted RBP14.17□□□□□ -0.14
USP40-217ENST00000496298 ZNF688P0C7X2 276 aa14.17□□□□□ -0.14
USP40-217ENST00000496298 DHRS2Q13268 280 aa14.17□□□□□ -0.14
USP40-217ENST00000496298 RNF125Q96EQ8 232 aa14.17□□□□□ -0.14
USP40-217ENST00000496298 SLC35E1Q96K37 410 aa14.17□□□□□ -0.14
USP40-217ENST00000496298 CIB3Q96Q77 187 aaPredicted RBP14.17□□□□□ -0.14
USP40-217ENST00000496298 C11orf68Q9H3H3 251 aaKnown RBP14.17□□□□□ -0.14
USP40-217ENST00000496298 CXorf65A6NEN9 183 aa14.16□□□□□ -0.14
USP40-217ENST00000496298 SYNGR2O43760 224 aa14.16□□□□□ -0.14
USP40-217ENST00000496298 HOXB5P09067 269 aa14.16□□□□□ -0.14
USP40-217ENST00000496298 IAPPP10997 89 aa14.16□□□□□ -0.14
USP40-217ENST00000496298 RAB11AP62491 216 aa14.16□□□□□ -0.14
USP40-217ENST00000496298 TMEM41BQ5BJD5 291 aa14.16□□□□□ -0.14
USP40-217ENST00000496298 GGNBP1Q5YKI7 109 aa14.16□□□□□ -0.14
USP40-217ENST00000496298 OR8G2PQ6IF36 304 aa14.16□□□□□ -0.14
USP40-217ENST00000496298 CEMP1Q6PRD7 247 aaPredicted RBP14.16□□□□□ -0.14
USP40-217ENST00000496298 OR11H2Q8NH07 326 aa14.16□□□□□ -0.14
USP40-217ENST00000496298 C9orf170A2RU37 121 aa14.15□□□□□ -0.14
USP40-217ENST00000496298 ZFP92A6NM28 416 aa14.15□□□□□ -0.14
USP40-217ENST00000496298 PRSS46E5RG02 174 aa14.15□□□□□ -0.14
USP40-217ENST00000496298 SPP1P10451 314 aa14.15□□□□□ -0.14
USP40-217ENST00000496298 NUP62P37198 522 aaPredicted RBP14.15□□□□□ -0.14
USP40-217ENST00000496298 ZNF90Q03938 601 aa14.15□□□□□ -0.14
USP40-217ENST00000496298 PMS2P11Q13670 270 aa14.15□□□□□ -0.14
USP40-217ENST00000496298 TRIQKQ629K1 86 aa14.15□□□□□ -0.14
USP40-217ENST00000496298 MORN3Q6PF18 240 aaPredicted RBP14.15□□□□□ -0.14
USP40-217ENST00000496298 SIGLEC15Q6ZMC9 328 aa14.15□□□□□ -0.14
USP40-217ENST00000496298 THAP8Q8NA92 274 aa14.15□□□□□ -0.14
USP40-217ENST00000496298 TRGV9Q99603 122 aa14.15□□□□□ -0.14
USP40-217ENST00000496298 NRN1Q9NPD7 142 aa14.15□□□□□ -0.14
USP40-217ENST00000496298 IGKV1OR2-108A0A075B7D4 117 aa14.14□□□□□ -0.15
USP40-217ENST00000496298 KNCNA6PVL3 124 aa14.14□□□□□ -0.15
USP40-217ENST00000496298 FABP1P07148 127 aa14.14□□□□□ -0.15
USP40-217ENST00000496298 INPP1P49441 399 aa14.14□□□□□ -0.15
USP40-217ENST00000496298 RPP30P78346 268 aaKnown RBP14.14□□□□□ -0.15
USP40-217ENST00000496298 RAB40CQ96S21 281 aa14.14□□□□□ -0.15
USP40-217ENST00000496298 PFDN2Q9UHV9 154 aa14.14□□□□□ -0.15
USP40-217ENST00000496298 BTCP35070 178 aa14.13□□□□□ -0.15
USP40-217ENST00000496298 ID3Q02535 119 aa14.13□□□□□ -0.15
USP40-217ENST00000496298 C1orf194Q5T5A4 169 aa14.13□□□□□ -0.15
USP40-217ENST00000496298 C7orf50Q9BRJ6 194 aaKnown RBP14.13□□□□□ -0.15
USP40-217ENST00000496298 MAGT1Q9H0U3 335 aa14.13□□□□□ -0.15
USP40-217ENST00000496298 FLVCR2Q9UPI3 526 aa14.13□□□□□ -0.15
USP40-217ENST00000496298 SNRPGP15A8MWD9 76 aa14.12□□□□□ -0.15
USP40-217ENST00000496298 WRBO00258 174 aa14.12□□□□□ -0.15
USP40-217ENST00000496298 ADAP1O75689 374 aa14.12□□□□□ -0.15
USP40-217ENST00000496298 SNRPD3P62318 126 aaKnown RBP14.12□□□□□ -0.15
USP40-217ENST00000496298 PSMG4Q5JS54 123 aa14.12□□□□□ -0.15
USP40-217ENST00000496298 ACTL10Q5JWF8 245 aa14.12□□□□□ -0.15
USP40-217ENST00000496298 PBDC1Q9BVG4 233 aa14.12□□□□□ -0.15
USP40-217ENST00000496298 NDUFA13Q9P0J0 144 aa14.12□□□□□ -0.15
USP40-217ENST00000496298 OR4E1P0C645 316 aa14.11□□□□□ -0.15
USP40-217ENST00000496298 IL7P13232 177 aa14.11□□□□□ -0.15
USP40-217ENST00000496298 CSNK1G2-AS1Q8NCQ2 148 aa14.11□□□□□ -0.15
USP40-217ENST00000496298 COQ8AQ8NI60 647 aa14.11□□□□□ -0.15
USP40-217ENST00000496298 LINC00476Q8WZB0 136 aa14.11□□□□□ -0.15
USP40-217ENST00000496298 KLK5Q9Y337 293 aaPredicted RBP14.11□□□□□ -0.15
USP40-217ENST00000496298 EPPK1P58107 5090 aaKnown RBP14.11□□□□□ -0.15
USP40-217ENST00000496298 CENPXA8MT69 81 aa14.1□□□□□ -0.15
USP40-217ENST00000496298 CFDP00746 253 aaPredicted RBP14.1□□□□□ -0.15
USP40-217ENST00000496298 C4BPBP20851 252 aa14.1□□□□□ -0.15
USP40-217ENST00000496298 CNPY1Q3B7I2 92 aa14.1□□□□□ -0.15
USP40-217ENST00000496298 Q8NAQ8 132 aa14.1□□□□□ -0.15
USP40-217ENST00000496298 PHLDA1Q8WV24 401 aaPredicted RBP14.1□□□□□ -0.15
USP40-217ENST00000496298 FBXL17Q9UF56 701 aa14.1□□□□□ -0.15
USP40-217ENST00000496298 ZNF705EA8MWA4 302 aaPredicted RBP14.09□□□□□ -0.15
USP40-217ENST00000496298 OR2F1Q13607 317 aa14.09□□□□□ -0.15
USP40-217ENST00000496298 SPANXN5Q5MJ07 72 aa14.09□□□□□ -0.15
USP40-217ENST00000496298 LCE2DQ5TA82 110 aaPredicted RBP14.09□□□□□ -0.15
USP40-217ENST00000496298 OR4D5Q8NGN0 318 aa14.09□□□□□ -0.15
USP40-217ENST00000496298 C11orf45Q8TAV5 145 aa14.09□□□□□ -0.15
USP40-217ENST00000496298 MFFQ9GZY8 342 aa14.09□□□□□ -0.15
USP40-217ENST00000496298 PAIP2BQ9ULR5 123 aaKnown RBP14.09□□□□□ -0.15
USP40-217ENST00000496298 STRAPQ9Y3F4 350 aaKnown RBP14.09□□□□□ -0.15
USP40-217ENST00000496298 LINC00854A0A1B0GVQ3 168 aa14.08□□□□□ -0.16
USP40-217ENST00000496298 H3BMM0 161 aa14.08□□□□□ -0.16
USP40-217ENST00000496298 IFNA21P01568 189 aa14.08□□□□□ -0.16
USP40-217ENST00000496298 ANXA7P20073 488 aaKnown RBP14.08□□□□□ -0.16
USP40-217ENST00000496298 NKX2-1P43699 371 aaPredicted RBP14.08□□□□□ -0.16
USP40-217ENST00000496298 LYZP61626 148 aa14.08□□□□□ -0.16
USP40-217ENST00000496298 SLC45A2Q9UMX9 530 aa14.08□□□□□ -0.16
USP40-217ENST00000496298 X6R8D5 127 aa14.08□□□□□ -0.16
USP40-217ENST00000496298 SOCS3O14543 225 aa14.07□□□□□ -0.16
USP40-217ENST00000496298 PLA2G10O15496 165 aa14.07□□□□□ -0.16
USP40-217ENST00000496298 MIFP14174 115 aa14.07□□□□□ -0.16
USP40-217ENST00000496298 NANOS2P60321 138 aaKnown RBP14.07□□□□□ -0.16
USP40-217ENST00000496298 POLR2GP62487 172 aaKnown RBP eCLIP14.07□□□□□ -0.16
USP40-217ENST00000496298 SMIM8Q96KF7 97 aa14.07□□□□□ -0.16
USP40-217ENST00000496298 WDR12Q9GZL7 423 aaKnown RBP14.07□□□□□ -0.16
USP40-217ENST00000496298 HRH4Q9H3N8 390 aa14.07□□□□□ -0.16
USP40-217ENST00000496298 PMS2P5A8MQ11 134 aa14.06□□□□□ -0.16
USP40-217ENST00000496298 H3BP45 60 aa14.06□□□□□ -0.16
USP40-217ENST00000496298 DEFB4AO15263 64 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms