RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-221	ENST00000495755	KNCN	A6PVL3	124 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	FAM90A26	D6RGX4	464 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	ZNF688	P0C7X2	276 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	VAMP1	P23763	118 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	EIF2B2	P49770	351 aa	Known RBP	5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	ZNF90	Q03938	601 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	DHRS2	Q13268	280 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	BAK1	Q16611	211 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	SPANXN2	Q5MJ10	180 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	MORN3	Q6PF18	240 aa	Predicted RBP	5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	STH	Q8IWL8	128 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	CENPS	Q8N2Z9	138 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	OR51G1	Q8NGK1	321 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	LINC00476	Q8WZB0	136 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	RNF125	Q96EQ8	232 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	RAB40C	Q96S21	281 aa		5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	C11orf68	Q9H3H3	251 aa	Known RBP	5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	SEPSECS	Q9HD40	501 aa	Known RBP	5.26	□□□□□ -1.57
VPS52-221	ENST00000495755	IGKV1OR2-108	A0A075B7D4	117 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	ZFP92	A6NM28	416 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	PRSS46	E5RG02	174 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	MED6	O75586	246 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	NDUFB6	O95139	128 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	SPP1	P10451	314 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	IAPP	P10997	89 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	C4BPB	P20851	252 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	UBE2M	P61081	183 aa	Known RBP	5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	RAB11A	P62491	216 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	TMEM41B	Q5BJD5	291 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	ACTL10	Q5JWF8	245 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	OR8G2P	Q6IF36	304 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	THAP8	Q8NA92	274 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	CSNK1G2-AS1	Q8NCQ2	148 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	C11orf45	Q8TAV5	145 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	PHLDA1	Q8WV24	401 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	SLC35E1	Q96K37	410 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	SDHC	Q99643	169 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	MAGT1	Q9H0U3	335 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	NRN1	Q9NPD7	142 aa		5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	KLK5	Q9Y337	293 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-221	ENST00000495755	KMT2A	Q03164	3969 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	C9orf170	A2RU37	121 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	NAP1L6	A6NFF2	107 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	ZNF705E	A8MWA4	302 aa	Predicted RBP	5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	SNRPGP15	A8MWD9	76 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	WRB	O00258	174 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	DEFB4A	O15263	64 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	SYNGR2	O43760	224 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	FABP1	P07148	127 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	HOXB5	P09067	269 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	NUP62	P37198	522 aa	Predicted RBP	5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	NANOS2	P60321	138 aa	Known RBP	5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	ID3	Q02535	119 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	PSMG4	Q5JS54	123 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	C1orf194	Q5T5A4	169 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	GGNBP1	Q5YKI7	109 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	SIGLEC15	Q6ZMC9	328 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755		Q8NAQ8	132 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	CIB3	Q96Q77	187 aa	Predicted RBP	5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	TRGV9	Q99603	122 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	PBDC1	Q9BVG4	233 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	MFF	Q9GZY8	342 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	PFDN2	Q9UHV9	154 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	FLVCR2	Q9UPI3	526 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755		X6R8D5	127 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	FRAS1	Q86XX4	4008 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	DNAH2	Q9P225	4427 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	AGRN	O00468	2067 aa		5.24	□□□□□ -1.57
VPS52-221	ENST00000495755	DNAH6	Q9C0G6	4158 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	IGHV4-28	A0A0C4DH34	117 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755		H3BMM0	161 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	SOCS3	O14543	225 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	ADAP1	O75689	374 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	LY6G6C	O95867	125 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	OR4E1	P0C645	316 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	RBMY1A1	P0DJD3	496 aa	Known RBP	5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	RBMY1C	P0DJD4	496 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	MIF	P14174	115 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	BTC	P35070	178 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	NKX2-1	P43699	371 aa	Predicted RBP	5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	INPP1	P49441	399 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	SNRPD3	P62318	126 aa	Known RBP	5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	RPP30	P78346	268 aa	Known RBP	5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	OR2F1	Q13607	317 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	RBMY1F	Q15415	496 aa	Known RBP	5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	TRIQK	Q629K1	86 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	WDR12	Q9GZL7	423 aa	Known RBP	5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	HRH4	Q9H3N8	390 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	CLEC5A	Q9NY25	188 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	FBXL17	Q9UF56	701 aa		5.23	□□□□□ -1.57
VPS52-221	ENST00000495755	LINC00854	A0A1B0GVQ3	168 aa		5.22	□□□□□ -1.57
VPS52-221	ENST00000495755	CFD	P00746	253 aa	Predicted RBP	5.22	□□□□□ -1.57
VPS52-221	ENST00000495755	IL7	P13232	177 aa		5.22	□□□□□ -1.57
VPS52-221	ENST00000495755	HLA-DRB4	P13762	266 aa		5.22	□□□□□ -1.57
VPS52-221	ENST00000495755	ANXA7	P20073	488 aa	Known RBP	5.22	□□□□□ -1.57
VPS52-221	ENST00000495755	PSMB3	P49720	205 aa		5.22	□□□□□ -1.57
VPS52-221	ENST00000495755	PAX9	P55771	341 aa		5.22	□□□□□ -1.57
VPS52-221	ENST00000495755	LYZ	P61626	148 aa		5.22	□□□□□ -1.57
VPS52-221	ENST00000495755	POLR2G	P62487	172 aa	Known RBP eCLIP	5.22	□□□□□ -1.57
VPS52-221	ENST00000495755	SPANXN5	Q5MJ07	72 aa		5.22	□□□□□ -1.57

Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms