RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 SLAMF6Q96DU3 332 aa0.63□□□□□ -2.31
PTPN4-212ENST00000488896 ZNF714Q96N38 554 aa0.63□□□□□ -2.31
PTPN4-212ENST00000488896 PRADC1Q9BSG0 188 aa0.63□□□□□ -2.31
PTPN4-212ENST00000488896 C20orf27Q9GZN8 174 aa0.63□□□□□ -2.31
PTPN4-212ENST00000488896 BCL2L10Q9HD36 194 aa0.63□□□□□ -2.31
PTPN4-212ENST00000488896 MED29Q9NX70 200 aa0.63□□□□□ -2.31
PTPN4-212ENST00000488896 TNRC6BQ9UPQ9 1833 aaKnown RBP0.63□□□□□ -2.31
PTPN4-212ENST00000488896 CCDC144AA2RUR9 1427 aa0.63□□□□□ -2.31
PTPN4-212ENST00000488896 PLXND1Q9Y4D7 1925 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 C7orf71A4D174 169 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 C2orf70A6NJV1 201 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 G3V2T6 193 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 GEMIN2O14893 280 aaKnown RBP0.62□□□□□ -2.31
PTPN4-212ENST00000488896 TAX1BP3O14907 124 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 OR1I1O60431 355 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 HYPMO75409 117 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 OR2B3O76000 313 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 NDUFC2O95298 119 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 DNAL4O96015 105 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 IFNA7P01567 189 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 CD2P06729 351 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 RNASE3P12724 160 aaKnown RBP0.62□□□□□ -2.31
PTPN4-212ENST00000488896 NFYBP25208 207 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 PPP1R2P41236 205 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 ATP5G3P48201 142 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 NCALDP61601 193 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 ESRGQ1W209 222 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 DEFB113Q30KQ7 82 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 AKR1C8PQ5T2L2 129 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 BCL2L15Q5TBC7 163 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 EIF5AL1Q6IS14 154 aaKnown RBP0.62□□□□□ -2.31
PTPN4-212ENST00000488896 SOSTDC1Q6X4U4 206 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 ZNF826PQ6ZT77 177 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 GOLT1AQ6ZVE7 132 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 PDZD9Q8IXQ8 264 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 IFT20Q8IY31 132 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 FAM19A2Q8N3H0 131 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 LINC00301Q8NCQ3 95 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 SLC30A7Q8NEW0 376 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 OR2T10Q8NGZ9 312 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 BORCS5Q969J3 196 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 CDC42SE1Q9NRR8 79 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 NHP2Q9NX24 153 aaKnown RBP0.62□□□□□ -2.31
PTPN4-212ENST00000488896 ZFP30Q9Y2G7 519 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 C22orf24Q9Y442 160 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 MYH10P35580 1976 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 ZNF106Q9H2Y7 1883 aaKnown RBP0.62□□□□□ -2.31
PTPN4-212ENST00000488896 HEATR1Q9H583 2144 aaKnown RBP0.62□□□□□ -2.31
PTPN4-212ENST00000488896 MED12Q93074 2177 aa0.62□□□□□ -2.31
PTPN4-212ENST00000488896 ROBO3Q96MS0 1386 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 A0A087WX48 190 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 FAM159BA6NKW6 160 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 C19orf84I3L1E1 186 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 NDUFB3O43676 98 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 OR2T1O43869 369 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 TIMM17BO60830 172 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 KLF7O75840 302 aaPredicted RBP0.61□□□□□ -2.31
PTPN4-212ENST00000488896 HAND1O96004 215 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 CST2P09228 141 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 NEFHP12036 1026 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 COX6A1P12074 109 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 ZNF25P17030 456 aaPredicted RBP0.61□□□□□ -2.31
PTPN4-212ENST00000488896 CAPZBP47756 277 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 TMBIM6P55061 237 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 ERVS71-1P61550 626 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 CNBPP62633 177 aaKnown RBP0.61□□□□□ -2.31
PTPN4-212ENST00000488896 DYNLT1P63172 113 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 GNG5P63218 68 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 RHOGP84095 191 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 TSNQ15631 228 aaKnown RBP0.61□□□□□ -2.31
PTPN4-212ENST00000488896 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.61□□□□□ -2.31
PTPN4-212ENST00000488896 CROCCP2Q86T23 111 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 Q8N814 137 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 ZHX1-C8orf76Q96EF9 292 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 ADAT3Q96EY9 351 aaPredicted RBP0.61□□□□□ -2.31
PTPN4-212ENST00000488896 YPEL2Q96QA6 119 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 PAIP2Q9BPZ3 127 aaKnown RBP0.61□□□□□ -2.31
PTPN4-212ENST00000488896 MRPL57Q9BQC6 102 aaKnown RBP0.61□□□□□ -2.31
PTPN4-212ENST00000488896 SLC25A21Q9BQT8 299 aaPredicted RBP0.61□□□□□ -2.31
PTPN4-212ENST00000488896 PBDC1Q9BVG4 233 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 NPCDR1Q9BY65 106 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 MIXL1Q9H2W2 232 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 PSTPIP2Q9H939 334 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 ARMC1Q9NVT9 282 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 GID8Q9NWU2 228 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 TAS2R7Q9NYW3 318 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 PCTPQ9UKL6 214 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 ARL5AQ9Y689 179 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 HECW2Q9P2P5 1572 aa0.61□□□□□ -2.31
PTPN4-212ENST00000488896 CHD3Q12873 2000 aaKnown RBP0.6□□□□□ -2.31
PTPN4-212ENST00000488896 HECW1Q76N89 1606 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 RTL1A6NKG5 1358 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 TRGV10A0A0A0MS01 117 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 DUXBA0A1W2PPF3 345 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 ATG12O94817 140 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 MIFP14174 115 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 G0S2P27469 103 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 PHBP35232 272 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 MYL5Q02045 173 aa0.6□□□□□ -2.31
PTPN4-212ENST00000488896 RRN3P1Q2M238 152 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms