RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 GAMTQ14353 236 aa10.88□□□□□ -0.67
LIMS3-204ENST00000482065 BAK1Q16611 211 aa10.88□□□□□ -0.67
LIMS3-204ENST00000482065 CEMP1Q6PRD7 247 aaPredicted RBP10.88□□□□□ -0.67
LIMS3-204ENST00000482065 TRPT1Q86TN4 253 aaKnown RBP10.88□□□□□ -0.67
LIMS3-204ENST00000482065 SLC35E1Q96K37 410 aa10.88□□□□□ -0.67
LIMS3-204ENST00000482065 MAGT1Q9H0U3 335 aa10.88□□□□□ -0.67
LIMS3-204ENST00000482065 PAIP2BQ9ULR5 123 aaKnown RBP10.88□□□□□ -0.67
LIMS3-204ENST00000482065 EPPK1P58107 5090 aaKnown RBP10.88□□□□□ -0.67
LIMS3-204ENST00000482065 ZFP92A6NM28 416 aa10.87□□□□□ -0.67
LIMS3-204ENST00000482065 DEFB4AO15263 64 aa10.87□□□□□ -0.67
LIMS3-204ENST00000482065 BUB3O43684 328 aa10.87□□□□□ -0.67
LIMS3-204ENST00000482065 SLC25A6P12236 298 aa10.87□□□□□ -0.67
LIMS3-204ENST00000482065 C4BPBP20851 252 aa10.87□□□□□ -0.67
LIMS3-204ENST00000482065 GPX4P36969 197 aaPredicted RBP10.87□□□□□ -0.67
LIMS3-204ENST00000482065 ATP5IP56385 69 aaPredicted RBP10.87□□□□□ -0.67
LIMS3-204ENST00000482065 PSMG4Q5JS54 123 aa10.87□□□□□ -0.67
LIMS3-204ENST00000482065 ACTL10Q5JWF8 245 aa10.87□□□□□ -0.67
LIMS3-204ENST00000482065 LINC00476Q8WZB0 136 aa10.87□□□□□ -0.67
LIMS3-204ENST00000482065 RNF125Q96EQ8 232 aa10.87□□□□□ -0.67
LIMS3-204ENST00000482065 PBDC1Q9BVG4 233 aa10.87□□□□□ -0.67
LIMS3-204ENST00000482065 TMED3Q9Y3Q3 217 aa10.87□□□□□ -0.67
LIMS3-204ENST00000482065 LINC00854A0A1B0GVQ3 168 aa10.86□□□□□ -0.67
LIMS3-204ENST00000482065 FAM90A26D6RGX4 464 aa10.86□□□□□ -0.67
LIMS3-204ENST00000482065 AP2S1P53680 142 aaPredicted RBP10.86□□□□□ -0.67
LIMS3-204ENST00000482065 GGNBP1Q5YKI7 109 aa10.86□□□□□ -0.67
LIMS3-204ENST00000482065 TRIQKQ629K1 86 aa10.86□□□□□ -0.67
LIMS3-204ENST00000482065 SIGLEC15Q6ZMC9 328 aa10.86□□□□□ -0.67
LIMS3-204ENST00000482065 FLVCR2Q9UPI3 526 aa10.86□□□□□ -0.67
LIMS3-204ENST00000482065 WRBO00258 174 aa10.85□□□□□ -0.67
LIMS3-204ENST00000482065 MED6O75586 246 aa10.85□□□□□ -0.67
LIMS3-204ENST00000482065 INPP1P49441 399 aa10.85□□□□□ -0.67
LIMS3-204ENST00000482065 NANOS2P60321 138 aaKnown RBP10.85□□□□□ -0.67
LIMS3-204ENST00000482065 LYZP61626 148 aa10.85□□□□□ -0.67
LIMS3-204ENST00000482065 RAB11AP62491 216 aa10.85□□□□□ -0.67
LIMS3-204ENST00000482065 OR2F1Q13607 317 aa10.85□□□□□ -0.67
LIMS3-204ENST00000482065 PHLDA1Q8WV24 401 aaPredicted RBP10.85□□□□□ -0.67
LIMS3-204ENST00000482065 RAB40CQ96S21 281 aa10.85□□□□□ -0.67
LIMS3-204ENST00000482065 SDHCQ99643 169 aaPredicted RBP10.85□□□□□ -0.67
LIMS3-204ENST00000482065 C11orf68Q9H3H3 251 aaKnown RBP10.85□□□□□ -0.67
LIMS3-204ENST00000482065 NRN1Q9NPD7 142 aa10.85□□□□□ -0.67
LIMS3-204ENST00000482065 IGKV1OR2-108A0A075B7D4 117 aa10.84□□□□□ -0.67
LIMS3-204ENST00000482065 C9orf170A2RU37 121 aa10.84□□□□□ -0.67
LIMS3-204ENST00000482065 SYNGR2O43760 224 aa10.84□□□□□ -0.67
LIMS3-204ENST00000482065 ADAP1O75689 374 aa10.84□□□□□ -0.67
LIMS3-204ENST00000482065 NDUFB6O95139 128 aa10.84□□□□□ -0.67
LIMS3-204ENST00000482065 LY6G6CO95867 125 aa10.84□□□□□ -0.67
LIMS3-204ENST00000482065 SPP1P10451 314 aa10.84□□□□□ -0.67
LIMS3-204ENST00000482065 MORN3Q6PF18 240 aaPredicted RBP10.84□□□□□ -0.67
LIMS3-204ENST00000482065 GSG1LQ6UXU4 331 aa10.84□□□□□ -0.67
LIMS3-204ENST00000482065 CLEC5AQ9NY25 188 aa10.84□□□□□ -0.67
LIMS3-204ENST00000482065 FBXL17Q9UF56 701 aa10.84□□□□□ -0.67
LIMS3-204ENST00000482065 KLK5Q9Y337 293 aaPredicted RBP10.84□□□□□ -0.67
LIMS3-204ENST00000482065 NAP1L6A6NFF2 107 aa10.83□□□□□ -0.68
LIMS3-204ENST00000482065 H3BP45 60 aa10.83□□□□□ -0.68
LIMS3-204ENST00000482065 UBE2MP61081 183 aaKnown RBP10.83□□□□□ -0.68
LIMS3-204ENST00000482065 SPANXN5Q5MJ07 72 aa10.83□□□□□ -0.68
LIMS3-204ENST00000482065 OR8G2PQ6IF36 304 aa10.83□□□□□ -0.68
LIMS3-204ENST00000482065 Q8NAQ8 132 aa10.83□□□□□ -0.68
LIMS3-204ENST00000482065 C11orf45Q8TAV5 145 aa10.83□□□□□ -0.68
LIMS3-204ENST00000482065 CIB3Q96Q77 187 aaPredicted RBP10.83□□□□□ -0.68
LIMS3-204ENST00000482065 TRGV9Q99603 122 aa10.83□□□□□ -0.68
LIMS3-204ENST00000482065 SNRPGP15A8MWD9 76 aa10.82□□□□□ -0.68
LIMS3-204ENST00000482065 PRSS46E5RG02 174 aa10.82□□□□□ -0.68
LIMS3-204ENST00000482065 ANXA7P20073 488 aaKnown RBP10.82□□□□□ -0.68
LIMS3-204ENST00000482065 BTCP35070 178 aa10.82□□□□□ -0.68
LIMS3-204ENST00000482065 NUP62P37198 522 aaPredicted RBP10.82□□□□□ -0.68
LIMS3-204ENST00000482065 DEFB1P60022 68 aa10.82□□□□□ -0.68
LIMS3-204ENST00000482065 SNRPD3P62318 126 aaKnown RBP10.82□□□□□ -0.68
LIMS3-204ENST00000482065 THAP8Q8NA92 274 aa10.82□□□□□ -0.68
LIMS3-204ENST00000482065 WDR12Q9GZL7 423 aaKnown RBP10.82□□□□□ -0.68
LIMS3-204ENST00000482065 IGHV4-28A0A0C4DH34 117 aa10.81□□□□□ -0.68
LIMS3-204ENST00000482065 FABP1P07148 127 aa10.81□□□□□ -0.68
LIMS3-204ENST00000482065 OR4E1P0C645 316 aa10.81□□□□□ -0.68
LIMS3-204ENST00000482065 RBMY1A1P0DJD3 496 aaKnown RBP10.81□□□□□ -0.68
LIMS3-204ENST00000482065 RBMY1CP0DJD4 496 aa10.81□□□□□ -0.68
LIMS3-204ENST00000482065 POLR2GP62487 172 aaKnown RBP eCLIP10.81□□□□□ -0.68
LIMS3-204ENST00000482065 RPP30P78346 268 aaKnown RBP10.81□□□□□ -0.68
LIMS3-204ENST00000482065 RBMY1FQ15415 496 aaKnown RBP10.81□□□□□ -0.68
LIMS3-204ENST00000482065 TMEM41BQ5BJD5 291 aa10.81□□□□□ -0.68
LIMS3-204ENST00000482065 COQ8AQ8NI60 647 aa10.81□□□□□ -0.68
LIMS3-204ENST00000482065 PPP1R14BQ96C90 147 aa10.81□□□□□ -0.68
LIMS3-204ENST00000482065 MFFQ9GZY8 342 aa10.81□□□□□ -0.68
LIMS3-204ENST00000482065 SEPSECSQ9HD40 501 aaKnown RBP10.81□□□□□ -0.68
LIMS3-204ENST00000482065 PFDN2Q9UHV9 154 aa10.81□□□□□ -0.68
LIMS3-204ENST00000482065 X6R8D5 127 aa10.81□□□□□ -0.68
LIMS3-204ENST00000482065 KMT2AQ03164 3969 aa10.8□□□□□ -0.68
LIMS3-204ENST00000482065 ZNF705EA8MWA4 302 aaPredicted RBP10.8□□□□□ -0.68
LIMS3-204ENST00000482065 H3BMM0 161 aa10.8□□□□□ -0.68
LIMS3-204ENST00000482065 IL7P13232 177 aa10.8□□□□□ -0.68
LIMS3-204ENST00000482065 GATA2P23769 480 aaPredicted RBP10.8□□□□□ -0.68
LIMS3-204ENST00000482065 GDF5OSQ5U4N7 250 aa10.8□□□□□ -0.68
LIMS3-204ENST00000482065 TMEM182Q6ZP80 229 aaPredicted RBP10.8□□□□□ -0.68
LIMS3-204ENST00000482065 ACOT7LQ6ZUV0 252 aa10.8□□□□□ -0.68
LIMS3-204ENST00000482065 CSNK1G2-AS1Q8NCQ2 148 aa10.8□□□□□ -0.68
LIMS3-204ENST00000482065 STRAPQ9Y3F4 350 aaKnown RBP10.8□□□□□ -0.68
LIMS3-204ENST00000482065 SOCS3O14543 225 aa10.79□□□□□ -0.68
LIMS3-204ENST00000482065 HLA-DRB4P13762 266 aa10.79□□□□□ -0.68
LIMS3-204ENST00000482065 NKX2-1P43699 371 aaPredicted RBP10.79□□□□□ -0.68
LIMS3-204ENST00000482065 ID3Q02535 119 aa10.79□□□□□ -0.68
LIMS3-204ENST00000482065 AKR1C1Q04828 323 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms