RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 SCAF4O95104 1147 aaKnown RBP11.22□□□□□ -0.61
COL9A3-209ENST00000469852 RD3LP0DJH9 198 aa11.22□□□□□ -0.61
COL9A3-209ENST00000469852 USF2Q15853 346 aaPredicted RBP11.22□□□□□ -0.61
COL9A3-209ENST00000469852 ATP6V1FQ16864 119 aa11.22□□□□□ -0.61
COL9A3-209ENST00000469852 FBXL17Q9UF56 701 aa11.22□□□□□ -0.61
COL9A3-209ENST00000469852 IGHV3OR16-13A0A075B7E8 117 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 IGHV3-49A0A0A0MS15 119 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 IGHV3-74A0A0B4J1X5 117 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 WI2-2373I1.2A0A1W2PRP0 233 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 AGPAT2O15120 278 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 ARPC5O15511 151 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 SCGB2A1O75556 95 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 APOHP02749 345 aaPredicted RBP11.21□□□□□ -0.61
COL9A3-209ENST00000469852 IL4P05112 153 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 FOLR2P14207 255 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 AP2S1P53680 142 aaPredicted RBP11.21□□□□□ -0.61
COL9A3-209ENST00000469852 TEPPQ6URK8 271 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 BTNL8Q6UX41 500 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 CYP2G1PQ6ZSU1 146 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 AKAP14Q86UN6 197 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 TCTE3Q8IZS6 198 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 OR51G1Q8NGK1 321 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 Q8WTZ3 238 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 ATP5SQ99766 215 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 DAZ1Q9NQZ3 744 aaKnown RBP11.21□□□□□ -0.61
COL9A3-209ENST00000469852 PEMTQ9UBM1 199 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 UFC1Q9Y3C8 167 aa11.21□□□□□ -0.61
COL9A3-209ENST00000469852 K7EMT4 169 aa11.2□□□□□ -0.62
COL9A3-209ENST00000469852 FGF7P21781 194 aa11.2□□□□□ -0.62
COL9A3-209ENST00000469852 CBLN1P23435 193 aa11.2□□□□□ -0.62
COL9A3-209ENST00000469852 ELLP55199 621 aaPredicted RBP11.2□□□□□ -0.62
COL9A3-209ENST00000469852 SAMD5Q5TGI4 173 aa11.2□□□□□ -0.62
COL9A3-209ENST00000469852 RNF125Q96EQ8 232 aa11.2□□□□□ -0.62
COL9A3-209ENST00000469852 ELOVL1Q9BW60 279 aa11.2□□□□□ -0.62
COL9A3-209ENST00000469852 GGTLC1Q9BX51 225 aa11.2□□□□□ -0.62
COL9A3-209ENST00000469852 MLXQ9UH92 298 aa11.2□□□□□ -0.62
COL9A3-209ENST00000469852 SLC45A2Q9UMX9 530 aa11.2□□□□□ -0.62
COL9A3-209ENST00000469852 NOTCH1P46531 2555 aa11.2□□□□□ -0.62
COL9A3-209ENST00000469852 IGHV3-66A0A0C4DH42 116 aa11.19□□□□□ -0.62
COL9A3-209ENST00000469852 C8orf88P0DMB2 117 aa11.19□□□□□ -0.62
COL9A3-209ENST00000469852 LYZP61626 148 aa11.19□□□□□ -0.62
COL9A3-209ENST00000469852 C9orf66Q5T8R8 295 aa11.19□□□□□ -0.62
COL9A3-209ENST00000469852 STPG3Q8N7X2 389 aa11.19□□□□□ -0.62
COL9A3-209ENST00000469852 INO80EQ8NBZ0 244 aaPredicted RBP11.19□□□□□ -0.62
COL9A3-209ENST00000469852 BPIFCQ8NFQ6 507 aa11.19□□□□□ -0.62
COL9A3-209ENST00000469852 NEURL2Q9BR09 285 aa11.19□□□□□ -0.62
COL9A3-209ENST00000469852 MCRIP2Q9BUT9 160 aaKnown RBP11.19□□□□□ -0.62
COL9A3-209ENST00000469852 PBDC1Q9BVG4 233 aa11.19□□□□□ -0.62
COL9A3-209ENST00000469852 WDR61Q9GZS3 305 aaKnown RBP11.19□□□□□ -0.62
COL9A3-209ENST00000469852 RFNGQ9Y644 331 aa11.19□□□□□ -0.62
COL9A3-209ENST00000469852 TGP01266 2768 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 IGHV7-4-1A0A0J9YVY3 117 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 IZUMO1RA6ND01 250 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 LINC00869P0C866 280 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 CXCL2P19875 107 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 NUP62P37198 522 aaPredicted RBP11.18□□□□□ -0.62
COL9A3-209ENST00000469852 CAMLGP49069 296 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 OPCMLQ14982 345 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 MIC13Q5XKP0 118 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 ST8SIA2Q92186 375 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 NPCDR1Q9BY65 106 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 MFFQ9GZY8 342 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 SIGLEC8Q9NYZ4 499 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 DOK5Q9P104 306 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 SMPXQ9UHP9 88 aa11.18□□□□□ -0.62
COL9A3-209ENST00000469852 HMSDA8MTL9 139 aa11.17□□□□□ -0.62
COL9A3-209ENST00000469852 CHEK1O14757 476 aa11.17□□□□□ -0.62
COL9A3-209ENST00000469852 IGLV1-51P01701 117 aa11.17□□□□□ -0.62
COL9A3-209ENST00000469852 FABP1P07148 127 aa11.17□□□□□ -0.62
COL9A3-209ENST00000469852 CRYBB3P26998 211 aa11.17□□□□□ -0.62
COL9A3-209ENST00000469852 GINS3Q9BRX5 216 aa11.17□□□□□ -0.62
COL9A3-209ENST00000469852 MRPL27Q9P0M9 148 aaKnown RBP11.17□□□□□ -0.62
COL9A3-209ENST00000469852 U3KQE9 123 aa11.17□□□□□ -0.62
COL9A3-209ENST00000469852 DFFBO76075 338 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 C1QBP02746 253 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 ORM2P19652 201 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 NPPCP23582 126 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 EIF2B2P49770 351 aaKnown RBP11.16□□□□□ -0.62
COL9A3-209ENST00000469852 KRTAP10-11P60412 298 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 SELENOTP62341 195 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 PRR20EP86478 221 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 PRR20CP86479 221 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 PRR20DP86480 221 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 PRR20BP86481 221 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 PRR20AP86496 221 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 DEFB114Q30KQ6 69 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 CD300EQ496F6 205 aaPredicted RBP11.16□□□□□ -0.62
COL9A3-209ENST00000469852 PATE2Q6UY27 113 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 MARC2Q969Z3 335 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 METTL26Q96S19 204 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 RSG1Q9BU20 258 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 RHPN1-AS1Q9BWJ2 59 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 VSIRQ9H7M9 311 aa11.16□□□□□ -0.62
COL9A3-209ENST00000469852 HNRNPCP07910 306 aaKnown RBP eCLIP11.15□□□□□ -0.621e-8■■■□□ 15.9
COL9A3-209ENST00000469852 INSL3P51460 131 aa11.15□□□□□ -0.62
COL9A3-209ENST00000469852 DEFA6Q01524 100 aa11.15□□□□□ -0.62
COL9A3-209ENST00000469852 BEAN1Q3B7T3 259 aa11.15□□□□□ -0.62
COL9A3-209ENST00000469852 RPL7L1Q6DKI1 246 aaKnown RBP11.15□□□□□ -0.62
COL9A3-209ENST00000469852 KCNRGQ8N5I3 272 aa11.15□□□□□ -0.62
COL9A3-209ENST00000469852 OR1B1Q8NGR6 318 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms