RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 RD3LP0DJH9 198 aa11.91□□□□□ -0.5
COL7A1-203ENST00000459756 EIF2B2P49770 351 aaKnown RBP11.91□□□□□ -0.5
COL7A1-203ENST00000459756 CIB3Q96Q77 187 aaPredicted RBP11.91□□□□□ -0.5
COL7A1-203ENST00000459756 RABAC1Q9UI14 185 aa11.91□□□□□ -0.5
COL7A1-203ENST00000459756 CCSO14618 274 aa11.9□□□□□ -0.5
COL7A1-203ENST00000459756 TOMM40O96008 361 aa11.9□□□□□ -0.5
COL7A1-203ENST00000459756 IL4P05112 153 aa11.9□□□□□ -0.5
COL7A1-203ENST00000459756 HNRNPCP07910 306 aaKnown RBP eCLIP11.9□□□□□ -0.5
COL7A1-203ENST00000459756 RAB11AP62491 216 aa11.9□□□□□ -0.5
COL7A1-203ENST00000459756 ZNF124Q15973 351 aa11.9□□□□□ -0.5
COL7A1-203ENST00000459756 DEFB135Q30KP9 77 aa11.9□□□□□ -0.5
COL7A1-203ENST00000459756 ZNF431Q8TF32 576 aaPredicted RBP11.9□□□□□ -0.5
COL7A1-203ENST00000459756 SLC35E1Q96K37 410 aa11.9□□□□□ -0.5
COL7A1-203ENST00000459756 TENM2Q9NT68 2774 aa11.9□□□□□ -0.5
COL7A1-203ENST00000459756 STARD9Q9P2P6 4700 aa11.89□□□□□ -0.51
COL7A1-203ENST00000459756 HELTA6NFD8 242 aa11.89□□□□□ -0.51
COL7A1-203ENST00000459756 MPTX1A8MV57 137 aa11.89□□□□□ -0.51
COL7A1-203ENST00000459756 INMT-MINDY4F8WBC2 141 aa11.89□□□□□ -0.51
COL7A1-203ENST00000459756 SYNGR2O43760 224 aa11.89□□□□□ -0.51
COL7A1-203ENST00000459756 IFNA21P01568 189 aa11.89□□□□□ -0.51
COL7A1-203ENST00000459756 IAPPP10997 89 aa11.89□□□□□ -0.51
COL7A1-203ENST00000459756 RPP30P78346 268 aaKnown RBP11.89□□□□□ -0.51
COL7A1-203ENST00000459756 GAMTQ14353 236 aa11.89□□□□□ -0.51
COL7A1-203ENST00000459756 USF2Q15853 346 aaPredicted RBP11.89□□□□□ -0.51
COL7A1-203ENST00000459756 STXBP6Q8NFX7 210 aa11.89□□□□□ -0.51
COL7A1-203ENST00000459756 MITD1Q8WV92 249 aa11.89□□□□□ -0.51
COL7A1-203ENST00000459756 RNF183Q96D59 192 aa11.89□□□□□ -0.51
COL7A1-203ENST00000459756 CSTL1Q9H114 145 aa11.89□□□□□ -0.51
COL7A1-203ENST00000459756 DYNC2H1Q8NCM8 4307 aaKnown RBP11.89□□□□□ -0.51
COL7A1-203ENST00000459756 ZFP92A6NM28 416 aa11.88□□□□□ -0.51
COL7A1-203ENST00000459756 FAM25EA8MYX2 175 aa11.88□□□□□ -0.51
COL7A1-203ENST00000459756 K7EQG2 157 aa11.88□□□□□ -0.51
COL7A1-203ENST00000459756 SCGB1D2O95969 90 aa11.88□□□□□ -0.51
COL7A1-203ENST00000459756 FABP1P07148 127 aa11.88□□□□□ -0.51
COL7A1-203ENST00000459756 PSG1P11464 419 aa11.88□□□□□ -0.51
COL7A1-203ENST00000459756 AP2S1P53680 142 aaPredicted RBP11.88□□□□□ -0.51
COL7A1-203ENST00000459756 DEFB131AP59861 70 aa11.88□□□□□ -0.51
COL7A1-203ENST00000459756 C16orf54Q6UWD8 224 aa11.88□□□□□ -0.51
COL7A1-203ENST00000459756 C12orf45Q8N5I9 185 aaPredicted RBP11.88□□□□□ -0.51
COL7A1-203ENST00000459756 OR51G1Q8NGK1 321 aa11.88□□□□□ -0.51
COL7A1-203ENST00000459756 GLMPQ8WWB7 406 aa11.88□□□□□ -0.51
COL7A1-203ENST00000459756 MAGT1Q9H0U3 335 aa11.88□□□□□ -0.51
COL7A1-203ENST00000459756 FAM24BQ8N5W8 94 aa11.87□□□□□ -0.51
COL7A1-203ENST00000459756 DCANP1Q8TF63 244 aa11.87□□□□□ -0.51
COL7A1-203ENST00000459756 RNF125Q96EQ8 232 aa11.87□□□□□ -0.51
COL7A1-203ENST00000459756 GPN1Q9HCN4 374 aaPredicted RBP11.87□□□□□ -0.51
COL7A1-203ENST00000459756 PFDN2Q9UHV9 154 aa11.87□□□□□ -0.51
COL7A1-203ENST00000459756 PAIP2BQ9ULR5 123 aaKnown RBP11.87□□□□□ -0.51
COL7A1-203ENST00000459756 IGKV1D-37A0A075B6S9 117 aa11.86□□□□□ -0.51
COL7A1-203ENST00000459756 WRBO00258 174 aa11.86□□□□□ -0.51
COL7A1-203ENST00000459756 BUB3O43684 328 aa11.86□□□□□ -0.51
COL7A1-203ENST00000459756 NUP62P37198 522 aaPredicted RBP11.86□□□□□ -0.51
COL7A1-203ENST00000459756 LEMD1Q68G75 181 aa11.86□□□□□ -0.51
COL7A1-203ENST00000459756 GSKIPQ9P0R6 139 aa11.86□□□□□ -0.51
COL7A1-203ENST00000459756 C5orf51A6NDU8 294 aa11.85□□□□□ -0.51
COL7A1-203ENST00000459756 PTTG1O95997 202 aa11.85□□□□□ -0.51
COL7A1-203ENST00000459756 IL5P05113 134 aa11.85□□□□□ -0.51
COL7A1-203ENST00000459756 ID3Q02535 119 aa11.85□□□□□ -0.51
COL7A1-203ENST00000459756 ZNF90Q03938 601 aa11.85□□□□□ -0.51
COL7A1-203ENST00000459756 IAH1Q2TAA2 248 aaPredicted RBP11.85□□□□□ -0.51
COL7A1-203ENST00000459756 OR8G2PQ6IF36 304 aa11.85□□□□□ -0.51
COL7A1-203ENST00000459756 STHQ8IWL8 128 aa11.85□□□□□ -0.51
COL7A1-203ENST00000459756 GATAD1Q8WUU5 269 aa11.85□□□□□ -0.51
COL7A1-203ENST00000459756 TRGV9Q99603 122 aa11.85□□□□□ -0.51
COL7A1-203ENST00000459756 A0A0J9YWU9 116 aa11.84□□□□□ -0.51
COL7A1-203ENST00000459756 LCE6AA0A183 80 aa11.84□□□□□ -0.51
COL7A1-203ENST00000459756 SNRPGP15A8MWD9 76 aa11.84□□□□□ -0.51
COL7A1-203ENST00000459756 PRAF2O60831 178 aa11.84□□□□□ -0.51
COL7A1-203ENST00000459756 ZNF688P0C7X2 276 aa11.84□□□□□ -0.51
COL7A1-203ENST00000459756 NKX2-1P43699 371 aaPredicted RBP11.84□□□□□ -0.51
COL7A1-203ENST00000459756 SPANXN5Q5MJ07 72 aa11.84□□□□□ -0.51
COL7A1-203ENST00000459756 SIGLEC15Q6ZMC9 328 aa11.84□□□□□ -0.51
COL7A1-203ENST00000459756 THAP8Q8NA92 274 aa11.84□□□□□ -0.51
COL7A1-203ENST00000459756 MARVELD1Q9BSK0 173 aa11.84□□□□□ -0.51
COL7A1-203ENST00000459756 PBDC1Q9BVG4 233 aa11.84□□□□□ -0.51
COL7A1-203ENST00000459756 STRAPQ9Y3F4 350 aaKnown RBP11.84□□□□□ -0.51
COL7A1-203ENST00000459756 LYSTQ99698 3801 aa11.83□□□□□ -0.52
COL7A1-203ENST00000459756 PRSS46E5RG02 174 aa11.83□□□□□ -0.52
COL7A1-203ENST00000459756 GOSR2O14653 212 aa11.83□□□□□ -0.52
COL7A1-203ENST00000459756 CA1P00915 261 aaPredicted RBP11.83□□□□□ -0.52
COL7A1-203ENST00000459756 ATF4P18848 351 aaPredicted RBP11.83□□□□□ -0.52
COL7A1-203ENST00000459756 TMEM217Q8N7C4 229 aa11.83□□□□□ -0.52
COL7A1-203ENST00000459756 ZBTB8BQ8NAP8 495 aaPredicted RBP11.83□□□□□ -0.52
COL7A1-203ENST00000459756 OR4D5Q8NGN0 318 aa11.83□□□□□ -0.52
COL7A1-203ENST00000459756 SEPSECSQ9HD40 501 aaKnown RBP11.83□□□□□ -0.52
COL7A1-203ENST00000459756 NRN1Q9NPD7 142 aa11.83□□□□□ -0.52
COL7A1-203ENST00000459756 SACSQ9NZJ4 4579 aa11.82□□□□□ -0.52
COL7A1-203ENST00000459756 IGKV1OR2-108A0A075B7D4 117 aa11.82□□□□□ -0.52
COL7A1-203ENST00000459756 H3BP45 60 aa11.82□□□□□ -0.52
COL7A1-203ENST00000459756 SSNA1O43805 119 aa11.82□□□□□ -0.52
COL7A1-203ENST00000459756 SSSCA1O60232 199 aa11.82□□□□□ -0.52
COL7A1-203ENST00000459756 CFDP00746 253 aaPredicted RBP11.82□□□□□ -0.52
COL7A1-203ENST00000459756 SNRPD3P62318 126 aaKnown RBP11.82□□□□□ -0.52
COL7A1-203ENST00000459756 POLR2GP62487 172 aaKnown RBP eCLIP11.82□□□□□ -0.52
COL7A1-203ENST00000459756 RGS21Q2M5E4 152 aa11.82□□□□□ -0.52
COL7A1-203ENST00000459756 TRPT1Q86TN4 253 aaKnown RBP11.82□□□□□ -0.52
COL7A1-203ENST00000459756 SIX6O95475 246 aa11.81□□□□□ -0.52
COL7A1-203ENST00000459756 LYZP61626 148 aa11.81□□□□□ -0.52
COL7A1-203ENST00000459756 OR2F1Q13607 317 aa11.81□□□□□ -0.52
COL7A1-203ENST00000459756 TMEM41BQ5BJD5 291 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 125.6 ms