RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TMEM95Q3KNT9 176 aa14.13□□□□□ -0.15
PTPRF-209ENST00000438120 CHCHD5Q9BSY4 110 aa14.13□□□□□ -0.15
PTPRF-209ENST00000438120 WNK3Q9BYP7 1800 aa14.13□□□□□ -0.15
PTPRF-209ENST00000438120 TPTE2P1Q5T6R2 138 aa14.13□□□□□ -0.15
PTPRF-209ENST00000438120 SAMD13Q5VXD3 122 aa14.13□□□□□ -0.15
PTPRF-209ENST00000438120 ZNF329Q86UD4 541 aa14.13□□□□□ -0.15
PTPRF-209ENST00000438120 SPCS1Q9Y6A9 102 aa14.13□□□□□ -0.15
PTPRF-209ENST00000438120 C10orf126Q8N4M7 172 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 HEPN1Q6WQI6 88 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 KIF26BQ2KJY2 2108 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 TRAV9-1A0A075B6T8 112 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 TMEM170AQ8WVE7 144 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 TRAV2A0A0B4J234 112 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 RBMY1BA6NDE4 496 aaKnown RBP14.12□□□□□ -0.15
PTPRF-209ENST00000438120 RBMY1EA6NEQ0 496 aaKnown RBP14.12□□□□□ -0.15
PTPRF-209ENST00000438120 NCR2O95944 276 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 RBMY1DP0C7P1 496 aaKnown RBP14.12□□□□□ -0.15
PTPRF-209ENST00000438120 RBMY1A1P0DJD3 496 aaKnown RBP14.12□□□□□ -0.15
PTPRF-209ENST00000438120 RBMY1CP0DJD4 496 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 ERVK11-1P61568 191 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 DMRTA1Q5VZB9 504 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 THADAQ6YHU6 1953 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 H3BUT2 72 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 FOXL1Q12952 345 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 GGTLC1Q9BX51 225 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 PNRC2Q9NPJ4 139 aaKnown RBP14.12□□□□□ -0.15
PTPRF-209ENST00000438120 GSN-AS1Q9NRJ2 163 aa14.12□□□□□ -0.15
PTPRF-209ENST00000438120 C17orf82Q86X59 251 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-209ENST00000438120 OSTCQ9NRP0 149 aa14.11□□□□□ -0.15
PTPRF-209ENST00000438120 NHP2Q9NX24 153 aaKnown RBP14.11□□□□□ -0.15
PTPRF-209ENST00000438120 XIRP1Q702N8 1843 aaKnown RBP14.11□□□□□ -0.15
PTPRF-209ENST00000438120 HBDP02042 147 aa14.11□□□□□ -0.15
PTPRF-209ENST00000438120 ZNF688P0C7X2 276 aa14.11□□□□□ -0.15
PTPRF-209ENST00000438120 COL8A2P25067 703 aa14.11□□□□□ -0.15
PTPRF-209ENST00000438120 TNFRSF14Q92956 283 aa14.11□□□□□ -0.15
PTPRF-209ENST00000438120 LYPD2Q6UXB3 125 aa14.11□□□□□ -0.15
PTPRF-209ENST00000438120 CYSLTR1Q9Y271 337 aa14.11□□□□□ -0.15
PTPRF-209ENST00000438120 DOCK6Q96HP0 2047 aa14.11□□□□□ -0.15
PTPRF-209ENST00000438120 RPL35AP18077 110 aaKnown RBP14.11□□□□□ -0.15
PTPRF-209ENST00000438120 IGHV3-53P01767 116 aa14.1□□□□□ -0.15
PTPRF-209ENST00000438120 TEX38Q6PEX7 206 aa14.1□□□□□ -0.15
PTPRF-209ENST00000438120 CRPP02741 224 aa14.1□□□□□ -0.15
PTPRF-209ENST00000438120 SUPT4H1P63272 117 aaKnown RBP14.1□□□□□ -0.15
PTPRF-209ENST00000438120 FAM169BQ8N8A8 192 aa14.1□□□□□ -0.15
PTPRF-209ENST00000438120 MDS2Q8NDY4 140 aa14.1□□□□□ -0.15
PTPRF-209ENST00000438120 SLC25A39Q9BZJ4 359 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-209ENST00000438120 NIT1Q86X76 327 aa14.1□□□□□ -0.15
PTPRF-209ENST00000438120 TRGV11A0A075B6L2 103 aa14.1□□□□□ -0.15
PTPRF-209ENST00000438120 NPC2P61916 151 aa14.1□□□□□ -0.15
PTPRF-209ENST00000438120 GAFA1Q96PS6 74 aa14.1□□□□□ -0.15
PTPRF-209ENST00000438120 DERL1Q9BUN8 251 aa14.1□□□□□ -0.15
PTPRF-209ENST00000438120 CHTOPQ9Y3Y2 248 aaKnown RBP14.1□□□□□ -0.15
PTPRF-209ENST00000438120 MGST2Q99735 147 aa14.09□□□□□ -0.15
PTPRF-209ENST00000438120 IGKV1-5P01602 117 aa14.09□□□□□ -0.15
PTPRF-209ENST00000438120 UNQ6494/PRO21346Q6UXR6 183 aa14.09□□□□□ -0.15
PTPRF-209ENST00000438120 FAM90A9PA6NNJ1 464 aa14.09□□□□□ -0.15
PTPRF-209ENST00000438120 LINC00473A8K010 186 aa14.09□□□□□ -0.15
PTPRF-209ENST00000438120 CD300EQ496F6 205 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-209ENST00000438120 BEND2Q8NDZ0 799 aa14.09□□□□□ -0.15
PTPRF-209ENST00000438120 OVOL1O14753 267 aa14.09□□□□□ -0.15
PTPRF-209ENST00000438120 SRSF7Q16629 238 aaKnown RBP eCLIP14.09□□□□□ -0.154e-7■■■□□ 19.2
PTPRF-209ENST00000438120 OR9G4Q8NGQ1 327 aa14.09□□□□□ -0.15
PTPRF-209ENST00000438120 Q8TAT8 98 aa14.09□□□□□ -0.15
PTPRF-209ENST00000438120 FREM3P0C091 2139 aa14.09□□□□□ -0.15
PTPRF-209ENST00000438120 DEFB121Q5J5C9 76 aa14.08□□□□□ -0.15
PTPRF-209ENST00000438120 DOPEY2Q9Y3R5 2298 aa14.08□□□□□ -0.16
PTPRF-209ENST00000438120 ADARB2-AS1A8MUL3 147 aa14.08□□□□□ -0.16
PTPRF-209ENST00000438120 ACTL10Q5JWF8 245 aa14.08□□□□□ -0.16
PTPRF-209ENST00000438120 TSKUQ8WUA8 353 aa14.08□□□□□ -0.16
PTPRF-209ENST00000438120 DPM2O94777 84 aa14.08□□□□□ -0.16
PTPRF-209ENST00000438120 TMEM8BA6NDV4 472 aa14.08□□□□□ -0.16
PTPRF-209ENST00000438120 MPZP25189 248 aa14.08□□□□□ -0.16
PTPRF-209ENST00000438120 H0YJW9 148 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 FCN3O75636 299 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 PRR30Q53SZ7 412 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-209ENST00000438120 SLC25A48Q6ZT89 311 aaKnown RBP14.07□□□□□ -0.16
PTPRF-209ENST00000438120 DMRTC2Q8IXT2 367 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-209ENST00000438120 HIST1H2BKO60814 126 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 HIST1H2BJP06899 126 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 HIST1H2BOP23527 126 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 HIST1H2BBP33778 126 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 HIST1H2BDP58876 126 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 HIST1H2BCP62807 126 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 HIST2H2BEQ16778 126 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-209ENST00000438120 HIST1H2BHQ93079 126 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 HIST1H2BNQ99877 126 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 HIST1H2BMQ99879 126 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 FNDC4Q9H6D8 234 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-209ENST00000438120 NCOR1O75376 2440 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 B4DSR2 109 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 LHFPL1Q86WI0 220 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 RNF182Q8N6D2 247 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 RCHY1Q96PM5 261 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 PAX2Q02962 417 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 IGKV1D-17A0A075B6S4 117 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 C19orf67A6NJJ6 358 aa14.07□□□□□ -0.16
PTPRF-209ENST00000438120 A0A1B0GWJ7 208 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 BUB1B-PAK6H3BSN5 160 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 ZNF474Q6S9Z5 364 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms