RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 CDSNQ15517 529 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 MRPL54Q6P161 138 aaKnown RBP11.48□□□□□ -0.57
LIG1-202ENST00000427526 FAM231DQ6ZW35 169 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 SIGLECL1Q8N7X8 197 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 Q8N976 141 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 VN1R17PQ8TDU5 208 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 H1FXQ92522 213 aaKnown RBP11.48□□□□□ -0.57
LIG1-202ENST00000427526 CCL17Q92583 94 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 RITA1Q96K30 269 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 RCHY1Q96PM5 261 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 SERTAD4Q9NUC0 356 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 CTSZQ9UBR2 303 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 A0A1W2PS18 150 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 TMEM238C9JI98 176 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 MYCNOSP40205 109 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 RNF151Q2KHN1 245 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 NGBQ9NPG2 151 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 NDUFB3O43676 98 aa11.47□□□□□ -0.57
LIG1-202ENST00000427526 SMIM15Q7Z3B0 74 aa11.47□□□□□ -0.57
LIG1-202ENST00000427526 RNASE6Q93091 150 aaKnown RBP11.47□□□□□ -0.57
LIG1-202ENST00000427526 TPSG1Q9NRR2 321 aa11.47□□□□□ -0.57
LIG1-202ENST00000427526 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.47□□□□□ -0.57
LIG1-202ENST00000427526 A0A1W2PPI3 338 aa11.47□□□□□ -0.57
LIG1-202ENST00000427526 LOXP28300 417 aaPredicted RBP11.47□□□□□ -0.57
LIG1-202ENST00000427526 LRRC10Q5BKY1 277 aa11.47□□□□□ -0.57
LIG1-202ENST00000427526 ASPHD1Q5U4P2 390 aa11.47□□□□□ -0.57
LIG1-202ENST00000427526 PVRIGQ6DKI7 326 aa11.47□□□□□ -0.57
LIG1-202ENST00000427526 WIPF2Q8TF74 440 aaPredicted RBP11.47□□□□□ -0.57
LIG1-202ENST00000427526 MIEN1Q9BRT3 115 aa11.47□□□□□ -0.57
LIG1-202ENST00000427526 TBL2Q9Y4P3 447 aaKnown RBP11.47□□□□□ -0.57
LIG1-202ENST00000427526 ARFGEF3Q5TH69 2177 aa11.47□□□□□ -0.57
LIG1-202ENST00000427526 PEX7O00628 323 aa11.46□□□□□ -0.57
LIG1-202ENST00000427526 ZNF253O75346 499 aa11.46□□□□□ -0.57
LIG1-202ENST00000427526 SRIP30626 198 aa11.46□□□□□ -0.57
LIG1-202ENST00000427526 RUSC1-AS1Q66K80 236 aa11.46□□□□□ -0.57
LIG1-202ENST00000427526 SSX8Q7RTT4 187 aa11.46□□□□□ -0.57
LIG1-202ENST00000427526 KCNS1Q96KK3 526 aa11.46□□□□□ -0.57
LIG1-202ENST00000427526 SLC25A17O43808 307 aa11.46□□□□□ -0.57
LIG1-202ENST00000427526 TMEM183BQ1AE95 376 aa11.46□□□□□ -0.57
LIG1-202ENST00000427526 MRPL52Q86TS9 123 aaKnown RBP11.46□□□□□ -0.57
LIG1-202ENST00000427526 C11orf42Q8N5U0 333 aa11.46□□□□□ -0.57
LIG1-202ENST00000427526 FAM103A1Q9BTL3 118 aaKnown RBP11.46□□□□□ -0.57
LIG1-202ENST00000427526 SSBP3Q9BWW4 388 aaPredicted RBP11.46□□□□□ -0.57
LIG1-202ENST00000427526 NRN1Q9NPD7 142 aa11.46□□□□□ -0.57
LIG1-202ENST00000427526 ZFP30Q9Y2G7 519 aa11.46□□□□□ -0.57
LIG1-202ENST00000427526 K7EP13 123 aa11.46□□□□□ -0.58
LIG1-202ENST00000427526 CRYGCP07315 174 aa11.46□□□□□ -0.58
LIG1-202ENST00000427526 RASL11AQ6T310 242 aa11.46□□□□□ -0.58
LIG1-202ENST00000427526 LINC00305Q7Z4B0 112 aa11.46□□□□□ -0.58
LIG1-202ENST00000427526 C7orf69Q9H7B7 122 aa11.46□□□□□ -0.58
LIG1-202ENST00000427526 KAAG1Q9UBP8 84 aa11.46□□□□□ -0.58
LIG1-202ENST00000427526 PAM16Q9Y3D7 125 aa11.46□□□□□ -0.58
LIG1-202ENST00000427526 TRAV34A0A0B4J273 112 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 CBY3A6NI87 242 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 VSTM5A8MXK1 200 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 C22orf46C9J442 243 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 APCSP02743 223 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 MC5RP33032 325 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 SLAQ13239 276 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 TMEM155Q4W5P6 130 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 ZNF705AQ6ZN79 300 aaPredicted RBP11.45□□□□□ -0.58
LIG1-202ENST00000427526 NUDT11Q96G61 164 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 VAMP8Q9BV40 100 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 DYNLRB1Q9NP97 96 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 IGLC7A0M8Q6 106 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 REG1AP05451 166 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 PTTG1IPP53801 180 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 LY6DQ14210 128 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 VMA21Q3ZAQ7 101 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 CFAP161Q6P656 301 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 ZNF586Q9NXT0 402 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 NAV3Q8IVL0 2385 aa11.45□□□□□ -0.58
LIG1-202ENST00000427526 COL6A6A6NMZ7 2263 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 A6NJY4 79 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 CD3EP07766 207 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 LGALS7P47929 136 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 AMTP48728 403 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 GRAMD2BQ96HH9 432 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 CCL25O15444 150 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 ZNF324O75467 553 aaPredicted RBP11.44□□□□□ -0.58
LIG1-202ENST00000427526 IGHV1-8P0DP01 117 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 MFAP2P55001 183 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 ADORA2A-AS1P86434 159 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 GDF5OSQ5U4N7 250 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 ZNF841Q6ZN19 808 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 NUP35Q8NFH5 326 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 ZNF331Q9NQX6 463 aaPredicted RBP11.44□□□□□ -0.58
LIG1-202ENST00000427526 PPBPP02775 128 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 KRTDAPP60985 99 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 CLUHP3Q96NS8 147 aa11.44□□□□□ -0.58
LIG1-202ENST00000427526 APOBEC3AP31941 199 aaPredicted RBP11.43□□□□□ -0.58
LIG1-202ENST00000427526 BMI1P35226 326 aa11.43□□□□□ -0.58
LIG1-202ENST00000427526 NIT1Q86X76 327 aa11.43□□□□□ -0.58
LIG1-202ENST00000427526 TSKUQ8WUA8 353 aa11.43□□□□□ -0.58
LIG1-202ENST00000427526 TNFRSF19Q9NS68 423 aa11.43□□□□□ -0.58
LIG1-202ENST00000427526 EPDR1Q9UM22 224 aa11.43□□□□□ -0.58
LIG1-202ENST00000427526 KLF12Q9Y4X4 402 aa11.43□□□□□ -0.58
LIG1-202ENST00000427526 C20orf202A1L168 122 aa11.43□□□□□ -0.58
LIG1-202ENST00000427526 DIRC3C9JPN6 131 aa11.43□□□□□ -0.58
LIG1-202ENST00000427526 TFPI2P48307 235 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms