RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 ZNF860A6NHJ4 632 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 ZNF727A8MUV8 499 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 A8MWL6 223 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 TMEM250H0YL14 139 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 PIN1P1O15428 100 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 NRASP01111 189 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 HRASP01112 189 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 KRASP01116 189 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 IFNA5P01569 189 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 SERPINA7P05543 415 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 DBIP07108 87 aaKnown RBP2.69□□□□□ -1.98
VPS54-204ENST00000416400 PFN1P07737 140 aaKnown RBP2.69□□□□□ -1.98
VPS54-204ENST00000416400 IFI6P09912 130 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 OR4A8P0C604 315 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 OR4Q2P0C623 313 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 EMP2P54851 167 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 PIGPP57054 158 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 S100A10P60903 97 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 BTG2P78543 158 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 SERF2P84101 59 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 BAXQ07812 192 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 EIF3IQ13347 325 aaKnown RBP2.69□□□□□ -1.98
VPS54-204ENST00000416400 GUSBP1Q15486 140 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 MSMO1Q15800 293 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 ADIRFQ15847 76 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 BATFQ16520 125 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 HIST3H3Q16695 136 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 IAH1Q2TAA2 248 aaPredicted RBP2.69□□□□□ -1.98
VPS54-204ENST00000416400 FBXL19-AS1Q494R0 122 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 PSMG4Q5JS54 123 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 SDHAF4Q5VUM1 108 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 MRPL54Q6P161 138 aaKnown RBP2.69□□□□□ -1.98
VPS54-204ENST00000416400 DEFB128Q7Z7B8 93 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 TMEM105Q8N8V8 129 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 OR52R1Q8NGF1 315 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 OR5H2Q8NGV7 314 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 CMTM2Q8TAZ6 248 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 SCGB1C1Q8TD33 95 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 RAB8BQ92930 207 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 SFRP2Q96HF1 295 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 TMEM56Q96MV1 263 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 GPR82Q96P67 336 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 METTL26Q96S19 204 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 TXNDC17Q9BRA2 123 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 OR51I2Q9H344 312 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 PRO0628Q9UI54 55 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 FUT9Q9Y231 359 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 TBL2Q9Y4P3 447 aaKnown RBP2.69□□□□□ -1.98
VPS54-204ENST00000416400 TRAPPC1Q9Y5R8 145 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 URGCP-MRPS24S4R325 110 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 TMEM56-RWDD3S4R434 201 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 NHSQ6T4R5 1651 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 CDK5RAP2Q96SN8 1893 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 SIPA1L1O43166 1804 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 A0A1W2PRS3 328 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 MYBPHLA2RUH7 354 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 CPSF4LA6NMK7 179 aaKnown RBP2.68□□□□□ -1.98
VPS54-204ENST00000416400 OR4C45A6NMZ5 311 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 OR11H12B2RN74 326 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 C17orf112F2Z3M2 114 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 SLC17A3O00476 420 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 IGKV1D-16P01601 117 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 MT-ND6P03923 174 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 CTSDP07339 412 aaPredicted RBP2.68□□□□□ -1.98
VPS54-204ENST00000416400 PIRTP0C851 137 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 ZNF708P17019 499 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 S100GP29377 79 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 GABRA3P34903 492 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 GUCA1AP43080 201 aaPredicted RBP2.68□□□□□ -1.98
VPS54-204ENST00000416400 REG1BP48304 166 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 PSMB3P49720 205 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 FXYD6P3P58550 94 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 TAS2R30P59541 319 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 YPEL3P61236 119 aaPredicted RBP2.68□□□□□ -1.98
VPS54-204ENST00000416400 ERVS71-1P61550 626 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 Q0VG73 95 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 RAB31Q13636 194 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 AADACL3Q5VUY0 350 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 CYP2G1PQ6ZSU1 146 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 ZNF550Q7Z398 422 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 TRAPPC6BQ86SZ2 158 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 PDPNQ86YL7 162 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 C1orf174Q8IYL3 243 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 OSR2Q8N2R0 312 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 C17orf78Q8N4C9 275 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 TSTD1Q8NFU3 115 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 OR11H1Q8NG94 326 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 OR4D11Q8NGI4 311 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 OR11H2Q8NH07 326 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 OR5AK3PQ8NH89 298 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 CLDND2Q8NHS1 167 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 ZNF563Q8TA94 476 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 MBD3L1Q8WWY6 194 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 BORCS7Q96B45 105 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 ZMYND19Q96E35 227 aaPredicted RBP2.68□□□□□ -1.98
VPS54-204ENST00000416400 OR2V2Q96R30 315 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 PSMG3Q9BT73 122 aaPredicted RBP2.68□□□□□ -1.98
VPS54-204ENST00000416400 MRPL20Q9BYC9 149 aaKnown RBP2.68□□□□□ -1.98
VPS54-204ENST00000416400 SPANXCQ9NY87 97 aa2.68□□□□□ -1.98
VPS54-204ENST00000416400 NXT1Q9UKK6 140 aaKnown RBP2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms