RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PGPA6NDG6 321 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 NPIPB13A6NJU9 1138 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 NPIPB4C9JG80 1138 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 C10orf105Q8TEF2 133 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 GPR146Q96CH1 333 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 FOXA3P55318 350 aaPredicted RBP6.04□□□□□ -1.44
SCN9A-202ENST00000409435 PLPPR1Q8TBJ4 325 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 MRGPRFQ96AM1 343 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 MRM2Q9UI43 246 aaKnown RBP6.04□□□□□ -1.44
SCN9A-202ENST00000409435 LHFPL6Q9Y693 200 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 B5MCH6 92 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 UCP3P55916 312 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 PSG9Q00887 426 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 INSL4Q14641 139 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 C5orf47Q569G3 176 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 TAF15Q92804 592 aaKnown RBP eCLIP6.04□□□□□ -1.44
SCN9A-202ENST00000409435 RTTNQ86VV8 2226 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 IGHV3-35A0A0C4DH35 117 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 CGB1A6NKQ9 187 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 CRPP02741 224 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 FAM19A2Q8N3H0 131 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 VPREB3Q9UKI3 123 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 SPTBP11277 2137 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 NABP1Q96AH0 204 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 HIST1H2BLQ99880 126 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 C19orf24Q9BVV8 132 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 C1QTNF5Q9BXJ0 243 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 RTN4RQ9BZR6 473 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 A0A1B0GWJ7 208 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 NCR2O95944 276 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 OR9G9P0C7N8 305 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 CYP2G1PQ6ZSU1 146 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 NINQ8N4C6 2090 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 H7C1H1 209 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 LOXL1Q08397 574 aaPredicted RBP6.03□□□□□ -1.44
SCN9A-202ENST00000409435 DMKNQ6E0U4 476 aaPredicted RBP6.03□□□□□ -1.44
SCN9A-202ENST00000409435 ZNF645Q8N7E2 425 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 CCL28Q9NRJ3 127 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 PIKFYVEQ9Y2I7 2098 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 DUTP33316 252 aaKnown RBP6.03□□□□□ -1.44
SCN9A-202ENST00000409435 CFHR2P36980 270 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 KLHDC3Q9BQ90 382 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 SPXQ9BT56 116 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 CEP250Q9BV73 2442 aa6.03□□□□□ -1.44
SCN9A-202ENST00000409435 IGHV2-26A0A0B4J1V2 119 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 IGHV4-61A0A0C4DH41 118 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A10PA6NDY2 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A18PA6NE21 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A16PA6NEW6 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A20PA6NIJ5 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A8PA6NJQ4 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A7PA6NKC0 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A22PA8MWA6 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A12PA8MX19 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A5PA8MXJ8 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A23PA8MXZ1 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 TMEM238C9JI98 176 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 CDK2AP2O75956 126 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A15PP0C7V4 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A13PP0C7W8 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A14PP0C7W9 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FAM90A24PP0C7X0 464 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 DEFB112Q30KQ8 113 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 LINC01559Q495D7 138 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 CD300EQ496F6 205 aaPredicted RBP6.02□□□□□ -1.45
SCN9A-202ENST00000409435 Q6AWC8 147 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 HIST3H2BBQ8N257 126 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 LRTM2Q8N967 370 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 IMMP2LQ96T52 175 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 RAMP3O60896 148 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 DUSP14O95147 198 aaKnown RBP6.02□□□□□ -1.45
SCN9A-202ENST00000409435 GPX1P07203 203 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 CGB3P0DN86 165 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 FER1L6-AS1Q8NA97 138 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 PPDPFLQ8WWR9 84 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 MBNL3Q9NUK0 354 aaKnown RBP6.02□□□□□ -1.45
SCN9A-202ENST00000409435 SMPXQ9UHP9 88 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 CRYBB3P26998 211 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 PSG3Q16557 428 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 CENPWQ5EE01 88 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 IZUMO1RA6ND01 250 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 HIST1H2BKO60814 126 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 IGKCP01834 107 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 HIST1H2BJP06899 126 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 ARL14EPLP0DKL9 152 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 C8orf88P0DMB2 117 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 HIST1H2BOP23527 126 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 HIST1H2BBP33778 126 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 HIST1H2BDP58876 126 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 RPS11P62280 158 aaKnown RBP eCLIP6.02□□□□□ -1.45
SCN9A-202ENST00000409435 HIST1H2BCP62807 126 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 SLAQ13239 276 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 HIST2H2BEQ16778 126 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.02□□□□□ -1.45
SCN9A-202ENST00000409435 C1QL2Q7Z5L3 287 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 Q8NA96 180 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 HIST1H2BHQ93079 126 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 HIST1H2BNQ99877 126 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 HIST1H2BMQ99879 126 aa6.02□□□□□ -1.45
SCN9A-202ENST00000409435 C21orf62Q9NYP8 219 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms