RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TMEM250H0YL14 139 aa10.78□□□□□ -0.68
PTPRF-202ENST00000372405 TSPAN9O75954 239 aa10.78□□□□□ -0.68
PTPRF-202ENST00000372405 BPIFB3P59826 476 aa10.78□□□□□ -0.68
PTPRF-202ENST00000372405 CST9LP1Q5W188 147 aa10.78□□□□□ -0.68
PTPRF-202ENST00000372405 Q6ZS46 218 aa10.78□□□□□ -0.68
PTPRF-202ENST00000372405 LINC00305Q7Z4B0 112 aa10.78□□□□□ -0.68
PTPRF-202ENST00000372405 NANPQ8TBE9 248 aa10.78□□□□□ -0.68
PTPRF-202ENST00000372405 ZNF48Q96MX3 618 aaPredicted RBP10.78□□□□□ -0.68
PTPRF-202ENST00000372405 FBXL7Q9UJT9 491 aa10.78□□□□□ -0.68
PTPRF-202ENST00000372405 HECTD1Q9ULT8 2610 aa10.78□□□□□ -0.68
PTPRF-202ENST00000372405 FASNP49327 2511 aaKnown RBP10.78□□□□□ -0.68
PTPRF-202ENST00000372405 TRBV9A0A0B4J1U6 114 aa10.77□□□□□ -0.68
PTPRF-202ENST00000372405 C7orf77A4D0Y5 90 aa10.77□□□□□ -0.68
PTPRF-202ENST00000372405 M0R036 132 aa10.77□□□□□ -0.68
PTPRF-202ENST00000372405 OR7C2O60412 319 aa10.77□□□□□ -0.68
PTPRF-202ENST00000372405 NDUFS6O75380 124 aaKnown RBP10.77□□□□□ -0.68
PTPRF-202ENST00000372405 IGHV3-23P01764 117 aa10.77□□□□□ -0.68
PTPRF-202ENST00000372405 IGHV4-59P01825 116 aa10.77□□□□□ -0.68
PTPRF-202ENST00000372405 OR10J4P0C629 311 aa10.77□□□□□ -0.68
PTPRF-202ENST00000372405 CRIP2P52943 208 aaPredicted RBP10.77□□□□□ -0.68
PTPRF-202ENST00000372405 BLCAPP62952 87 aa10.77□□□□□ -0.68
PTPRF-202ENST00000372405 PQLC2Q6ZP29 291 aa10.77□□□□□ -0.68
PTPRF-202ENST00000372405 OR5AU1Q8NGC0 362 aa10.77□□□□□ -0.68
PTPRF-202ENST00000372405 RNF2Q99496 336 aa10.77□□□□□ -0.68
PTPRF-202ENST00000372405 C21orf62Q9NYP8 219 aa10.77□□□□□ -0.68
PTPRF-202ENST00000372405 LINC00527Q9UJ94 153 aa10.77□□□□□ -0.68
PTPRF-202ENST00000372405 ELOA3CA0A087WX78 387 aaPredicted RBP10.77□□□□□ -0.69
PTPRF-202ENST00000372405 MFAP4P55083 255 aa10.77□□□□□ -0.69
PTPRF-202ENST00000372405 TAS2R45P59539 299 aa10.77□□□□□ -0.69
PTPRF-202ENST00000372405 CYB5R2Q6BCY4 276 aa10.77□□□□□ -0.69
PTPRF-202ENST00000372405 THYN1Q9P016 225 aa10.77□□□□□ -0.69
PTPRF-202ENST00000372405 HYPMO75409 117 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 RD3LP0DJH9 198 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 PYYP10082 97 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 C9orf152Q5JTZ5 239 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 RPUSD4Q96CM3 377 aaKnown RBP10.76□□□□□ -0.69
PTPRF-202ENST00000372405 TMEM68Q96MH6 324 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 NIPSNAP3BQ9BS92 247 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 PARLQ9H300 379 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 TRAV41A0A0B4J266 112 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 GNG7O60262 68 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 IGHG2P01859 326 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 IER3P46695 156 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 LYZP61626 148 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 RHOGP84095 191 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 C15orf32Q32M92 178 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 C9orf139Q6ZV77 190 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 ZNF414Q96IQ9 312 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 TMEM167BQ9NRX6 74 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 PITPNC1Q9UKF7 332 aa10.76□□□□□ -0.69
PTPRF-202ENST00000372405 OR2T8A6NH00 312 aa10.75□□□□□ -0.69
PTPRF-202ENST00000372405 ZNF727A8MUV8 499 aa10.75□□□□□ -0.69
PTPRF-202ENST00000372405 TOMM40O96008 361 aa10.75□□□□□ -0.69
PTPRF-202ENST00000372405 IGF1P05019 195 aa10.75□□□□□ -0.69
PTPRF-202ENST00000372405 HIST1H1BP16401 226 aaKnown RBP10.75□□□□□ -0.69
PTPRF-202ENST00000372405 Q56UQ5 140 aa10.75□□□□□ -0.69
PTPRF-202ENST00000372405 LEMD1Q68G75 181 aa10.75□□□□□ -0.69
PTPRF-202ENST00000372405 ZNF491Q8N8L2 437 aa10.75□□□□□ -0.69
PTPRF-202ENST00000372405 DERL1Q9BUN8 251 aa10.75□□□□□ -0.69
PTPRF-202ENST00000372405 RPS10P5Q9NQ39 176 aa10.75□□□□□ -0.69
PTPRF-202ENST00000372405 MRPL27Q9P0M9 148 aaKnown RBP10.75□□□□□ -0.69
PTPRF-202ENST00000372405 M0QZK8 103 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 PDE6DO43924 150 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 CTSGP08311 255 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 FCGR2BP31994 310 aaPredicted RBP10.74□□□□□ -0.69
PTPRF-202ENST00000372405 ADMP35318 185 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 YPEL3P61236 119 aaPredicted RBP10.74□□□□□ -0.69
PTPRF-202ENST00000372405 RHEBQ15382 184 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 ZNF674Q2M3X9 581 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 C16orf82Q7Z2V1 217 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 ZNF502Q8TBZ5 544 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 VN1R17PQ8TDU5 208 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 FXYD5Q96DB9 178 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 TVP23CQ96ET8 276 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 NOL4LQ96MY1 436 aaPredicted RBP10.74□□□□□ -0.69
PTPRF-202ENST00000372405 MS4A10Q96PG2 267 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 SMIM7Q9BQ49 75 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 CHRDL1Q9BU40 450 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 SDF2L1Q9HCN8 221 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 ARL2-SNX15V9GYD0 113 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 TRAV30A0A087WSZ9 112 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 SCO2A0A1W2PP80 73 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 WI2-2373I1.2A0A1W2PRP0 233 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 GGTLC3B5MD39 225 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 UBE2L3P68036 154 aaKnown RBP10.74□□□□□ -0.69
PTPRF-202ENST00000372405 TXNDC17Q9BRA2 123 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 PAXXQ9BUH6 204 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 OR51M1Q9H341 326 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 HIGD1AQ9Y241 93 aa10.74□□□□□ -0.69
PTPRF-202ENST00000372405 SMAD7O15105 426 aaKnown RBP10.73□□□□□ -0.69
PTPRF-202ENST00000372405 NDUFB4O95168 129 aa10.73□□□□□ -0.69
PTPRF-202ENST00000372405 SNRPCP09234 159 aaKnown RBP10.73□□□□□ -0.69
PTPRF-202ENST00000372405 USF2Q15853 346 aaPredicted RBP10.73□□□□□ -0.69
PTPRF-202ENST00000372405 NECAP1Q8NC96 275 aa10.73□□□□□ -0.69
PTPRF-202ENST00000372405 RNF125Q96EQ8 232 aa10.73□□□□□ -0.69
PTPRF-202ENST00000372405 CCDC140Q96MF4 163 aa10.73□□□□□ -0.69
PTPRF-202ENST00000372405 SLC25A39Q9BZJ4 359 aaPredicted RBP10.73□□□□□ -0.69
PTPRF-202ENST00000372405 F6UZH7 168 aa10.72□□□□□ -0.69
PTPRF-202ENST00000372405 IL4P05112 153 aa10.72□□□□□ -0.69
PTPRF-202ENST00000372405 FABP1P07148 127 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms