RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 OXGR1Q96P68 337 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 MPC1Q9Y5U8 109 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 BAHCC1Q9P281 2608 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 TEX15Q9BXT5 2789 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 PIGBOS1A0A0B4J2F0 54 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 RHBDL1O75783 438 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 ADH4P08319 380 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 G6PCP35575 357 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 WFDC2Q14508 124 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 OR1C1Q15619 314 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 PDLIM3Q53GG5 364 aaPredicted RBP4.53□□□□□ -1.68
CSDE1-202ENST00000339438 IBA57Q5T440 356 aaKnown RBP4.53□□□□□ -1.68
CSDE1-202ENST00000339438 FAM231DQ6ZW35 169 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 ZGRF1Q86YA3 2104 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 AKAP6Q13023 2319 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 A0A1W2PRE2 83 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 HELTA6NFD8 242 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 FAM87AP0C7U9 286 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 MAGEA5P43359 124 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 MIC13Q5XKP0 118 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 ZNF71Q9NQZ8 489 aaPredicted RBP4.53□□□□□ -1.68
CSDE1-202ENST00000339438 SIGLEC8Q9NYZ4 499 aa4.53□□□□□ -1.68
CSDE1-202ENST00000339438 HUWE1Q7Z6Z7 4374 aaKnown RBP4.53□□□□□ -1.68
CSDE1-202ENST00000339438 USF3Q68DE3 2245 aa4.53□□□□□ -1.69
CSDE1-202ENST00000339438 HELZ2Q9BYK8 2649 aaKnown RBP4.53□□□□□ -1.69
CSDE1-202ENST00000339438 K7EQM0 130 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 NHLRC4P0CG21 123 aaPredicted RBP4.52□□□□□ -1.69
CSDE1-202ENST00000339438 GNG4P50150 75 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 SUMO3P55854 103 aaPredicted RBP4.52□□□□□ -1.69
CSDE1-202ENST00000339438 PRR20EP86478 221 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 PRR20CP86479 221 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 PRR20DP86480 221 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 PRR20BP86481 221 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 PRR20AP86496 221 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 FAM27BQ5VT28 67 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 FDCSPQ8NFU4 85 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 VGLL1Q99990 258 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 PMCHL2Q9BQD1 86 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 MS4A5Q9H3V2 200 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 ERG28Q9UKR5 140 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 HILPDAQ9Y5L2 63 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 HSPB6O14558 160 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 IGHV3-7P01780 117 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 FAM53AQ6NSI3 398 aaPredicted RBP4.52□□□□□ -1.69
CSDE1-202ENST00000339438 SSX8Q7RTT4 187 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 FGFBP3Q8TAT2 258 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 IL1F10Q8WWZ1 152 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 GPR82Q96P67 336 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 SSBP3Q9BWW4 388 aaPredicted RBP4.52□□□□□ -1.69
CSDE1-202ENST00000339438 PRRG4Q9BZD6 226 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 LIN7CQ9NUP9 197 aaKnown RBP4.52□□□□□ -1.69
CSDE1-202ENST00000339438 MRPL16Q9NX20 251 aaKnown RBP4.52□□□□□ -1.69
CSDE1-202ENST00000339438 ZANQ9Y493 2812 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 MGST3O14880 152 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 SIVA1O15304 175 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 CXCL13O43927 109 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 MPDU1O75352 247 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 LEPROTL1O95214 131 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 TMEM177Q53S58 311 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 PRAMEF5Q5TYX0 476 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 PRAMEF6Q5VXH4 476 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 ZNF418Q8TF45 676 aaPredicted RBP4.52□□□□□ -1.69
CSDE1-202ENST00000339438 CACNG8Q8WXS5 425 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 RNF183Q96D59 192 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 SNRNP40Q96DI7 357 aaKnown RBP4.52□□□□□ -1.69
CSDE1-202ENST00000339438 TM2D2Q9BX73 214 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 C1QTNF5Q9BXJ0 243 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 TMEM191AQ9H0A3 160 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 SS18L2Q9UHA2 77 aa4.52□□□□□ -1.69
CSDE1-202ENST00000339438 APOHP02749 345 aaPredicted RBP4.51□□□□□ -1.69
CSDE1-202ENST00000339438 VDAC2P45880 294 aaPredicted RBP4.51□□□□□ -1.69
CSDE1-202ENST00000339438 PAX8Q06710 450 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 SPINK9Q5DT21 86 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 BPIFA4PQ86YQ2 179 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 ZNF747Q9BV97 191 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 ZNF257Q9Y2Q1 563 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 A0A096LNT2 108 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 A0A1W2PPV4 95 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 VSTM5A8MXK1 200 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 LCNL1Q6ZST4 164 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 SERTAD4Q9NUC0 356 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 TNFRSF18Q9Y5U5 241 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 CADP27708 2225 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 A6NDN8 102 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 C17orf98A8MV24 154 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 F8W1H4 67 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 SS18L1O75177 396 aaPredicted RBP4.51□□□□□ -1.69
CSDE1-202ENST00000339438 CA6P23280 308 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 LINC00205P59089 165 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 ODF1Q14990 250 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 LTC4SQ16873 150 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 SAMD5Q5TGI4 173 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 Q6P435 159 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 SH2D6Q7Z4S9 175 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 Q8TCH9 128 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 LINC00479Q96M42 142 aa4.51□□□□□ -1.69
CSDE1-202ENST00000339438 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.51□□□□□ -1.69
CSDE1-202ENST00000339438 MBNL3Q9NUK0 354 aaKnown RBP4.51□□□□□ -1.69
CSDE1-202ENST00000339438 E9PLD3 99 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 SLC25A17O43808 307 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms