RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CYP2G1PQ6ZSU1 146 aa16.89■□□□□ 0.3
SDC3-202ENST00000339394 OR51G1Q8NGK1 321 aa16.89■□□□□ 0.3
SDC3-202ENST00000339394 PEMTQ9UBM1 199 aa16.89■□□□□ 0.3
SDC3-202ENST00000339394 A8MWP6 167 aa16.89■□□□□ 0.29
SDC3-202ENST00000339394 IL4P05112 153 aa16.89■□□□□ 0.29
SDC3-202ENST00000339394 FGF7P21781 194 aa16.89■□□□□ 0.29
SDC3-202ENST00000339394 RAB31Q13636 194 aa16.89■□□□□ 0.29
SDC3-202ENST00000339394 IL34Q6ZMJ4 242 aa16.89■□□□□ 0.29
SDC3-202ENST00000339394 DAZ1Q9NQZ3 744 aaKnown RBP16.89■□□□□ 0.29
SDC3-202ENST00000339394 UFC1Q9Y3C8 167 aa16.89■□□□□ 0.29
SDC3-202ENST00000339394 TMEM213A2RRL7 107 aa16.88■□□□□ 0.29
SDC3-202ENST00000339394 CAMLGP49069 296 aa16.88■□□□□ 0.29
SDC3-202ENST00000339394 ZNF345Q14585 488 aa16.88■□□□□ 0.29
SDC3-202ENST00000339394 WDR61Q9GZS3 305 aaKnown RBP16.88■□□□□ 0.29
SDC3-202ENST00000339394 ZNF207O43670 478 aaKnown RBP16.87■□□□□ 0.29
SDC3-202ENST00000339394 CXCL2P19875 107 aa16.87■□□□□ 0.29
SDC3-202ENST00000339394 EDN2P20800 178 aa16.87■□□□□ 0.29
SDC3-202ENST00000339394 SELENOTP62341 195 aa16.87■□□□□ 0.29
SDC3-202ENST00000339394 HYLS1Q96M11 299 aa16.87■□□□□ 0.29
SDC3-202ENST00000339394 SLC45A2Q9UMX9 530 aa16.87■□□□□ 0.29
SDC3-202ENST00000339394 WI2-2373I1.2A0A1W2PRP0 233 aa16.86■□□□□ 0.29
SDC3-202ENST00000339394 C2orf70A6NJV1 201 aa16.86■□□□□ 0.29
SDC3-202ENST00000339394 K7EMT4 169 aa16.86■□□□□ 0.29
SDC3-202ENST00000339394 MPDU1O75352 247 aa16.86■□□□□ 0.29
SDC3-202ENST00000339394 IFNA5P01569 189 aa16.86■□□□□ 0.29
SDC3-202ENST00000339394 CSN3P07498 182 aa16.86■□□□□ 0.29
SDC3-202ENST00000339394 EIF2B2P49770 351 aaKnown RBP16.86■□□□□ 0.29
SDC3-202ENST00000339394 ELLP55199 621 aaPredicted RBP16.86■□□□□ 0.29
SDC3-202ENST00000339394 USF2Q15853 346 aaPredicted RBP16.86■□□□□ 0.29
SDC3-202ENST00000339394 KCNRGQ8N5I3 272 aa16.86■□□□□ 0.29
SDC3-202ENST00000339394 BPIFCQ8NFQ6 507 aa16.86■□□□□ 0.29
SDC3-202ENST00000339394 RNF125Q96EQ8 232 aa16.86■□□□□ 0.29
SDC3-202ENST00000339394 GINS3Q9BRX5 216 aa16.86■□□□□ 0.29
SDC3-202ENST00000339394 ELOVL1Q9BW60 279 aa16.86■□□□□ 0.29
SDC3-202ENST00000339394 GGTLC1Q9BX51 225 aa16.86■□□□□ 0.29
SDC3-202ENST00000339394 NPCDR1Q9BY65 106 aa16.86■□□□□ 0.29
SDC3-202ENST00000339394 ZNF266Q14584 549 aa16.85■□□□□ 0.29
SDC3-202ENST00000339394 ZFP69Q49AA0 526 aa16.85■□□□□ 0.29
SDC3-202ENST00000339394 SEC14L6B5MCN3 397 aa16.85■□□□□ 0.29
SDC3-202ENST00000339394 PFDN1O60925 122 aa16.85■□□□□ 0.29
SDC3-202ENST00000339394 CFDP00746 253 aaPredicted RBP16.85■□□□□ 0.29
SDC3-202ENST00000339394 CBLN1P23435 193 aa16.85■□□□□ 0.29
SDC3-202ENST00000339394 LYZP61626 148 aa16.85■□□□□ 0.29
SDC3-202ENST00000339394 ADAMTSL5Q6ZMM2 481 aa16.85■□□□□ 0.29
SDC3-202ENST00000339394 SCGB1C1Q8TD33 95 aa16.85■□□□□ 0.29
SDC3-202ENST00000339394 PBDC1Q9BVG4 233 aa16.85■□□□□ 0.29
SDC3-202ENST00000339394 A0A0D9SG52 128 aa16.84■□□□□ 0.29
SDC3-202ENST00000339394 SAP30O75446 220 aa16.84■□□□□ 0.29
SDC3-202ENST00000339394 LINC00869P0C866 280 aa16.84■□□□□ 0.29
SDC3-202ENST00000339394 FOLR2P14207 255 aa16.84■□□□□ 0.29
SDC3-202ENST00000339394 IGLL1P15814 213 aa16.84■□□□□ 0.29
SDC3-202ENST00000339394 MIC13Q5XKP0 118 aa16.84■□□□□ 0.29
SDC3-202ENST00000339394 MCRIP2Q9BUT9 160 aaKnown RBP16.84■□□□□ 0.29
SDC3-202ENST00000339394 PARD6GQ9BYG4 376 aaPredicted RBP16.84■□□□□ 0.29
SDC3-202ENST00000339394 TAAR5O14804 337 aa16.83■□□□□ 0.28
SDC3-202ENST00000339394 RPL29P47914 159 aaKnown RBP16.83■□□□□ 0.28
SDC3-202ENST00000339394 OPCMLQ14982 345 aa16.83■□□□□ 0.28
SDC3-202ENST00000339394 LGALSLQ3ZCW2 172 aaPredicted RBP16.83■□□□□ 0.28
SDC3-202ENST00000339394 RPL7L1Q6DKI1 246 aaKnown RBP16.83■□□□□ 0.28
SDC3-202ENST00000339394 STPG3Q8N7X2 389 aa16.83■□□□□ 0.28
SDC3-202ENST00000339394 METTL26Q96S19 204 aa16.83■□□□□ 0.28
SDC3-202ENST00000339394 SIGLEC8Q9NYZ4 499 aa16.83■□□□□ 0.28
SDC3-202ENST00000339394 MRPL27Q9P0M9 148 aaKnown RBP16.83■□□□□ 0.28
SDC3-202ENST00000339394 C8orf88P0DMB2 117 aa16.82■□□□□ 0.28
SDC3-202ENST00000339394 ORM2P19652 201 aa16.82■□□□□ 0.28
SDC3-202ENST00000339394 NPPCP23582 126 aa16.82■□□□□ 0.28
SDC3-202ENST00000339394 PRR20EP86478 221 aa16.82■□□□□ 0.28
SDC3-202ENST00000339394 PRR20CP86479 221 aa16.82■□□□□ 0.28
SDC3-202ENST00000339394 PRR20DP86480 221 aa16.82■□□□□ 0.28
SDC3-202ENST00000339394 PRR20BP86481 221 aa16.82■□□□□ 0.28
SDC3-202ENST00000339394 PRR20AP86496 221 aa16.82■□□□□ 0.28
SDC3-202ENST00000339394 MARC2Q969Z3 335 aa16.82■□□□□ 0.28
SDC3-202ENST00000339394 RSG1Q9BU20 258 aa16.82■□□□□ 0.28
SDC3-202ENST00000339394 ARL6Q9H0F7 186 aa16.82■□□□□ 0.28
SDC3-202ENST00000339394 IGHV3-49A0A0A0MS15 119 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 IGHV7-4-1A0A0J9YVY3 117 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 APOHP02749 345 aaPredicted RBP16.81■□□□□ 0.28
SDC3-202ENST00000339394 CRYBB3P26998 211 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 ZNF709Q8N972 641 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 OR1B1Q8NGR6 318 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 ARPC5LQ9BPX5 153 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 CYTL1Q9NRR1 136 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 SMPXQ9UHP9 88 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 RABAC1Q9UI14 185 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 NOTCH3Q9UM47 2321 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 IGHV3OR16-13A0A075B7E8 117 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 IGHV3-74A0A0B4J1X5 117 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 PLP1P60201 277 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 B2MP61769 119 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 TMUB2Q71RG4 321 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 PXMP4Q9Y6I8 212 aa16.81■□□□□ 0.28
SDC3-202ENST00000339394 C17orf112F2Z3M2 114 aa16.8■□□□□ 0.28
SDC3-202ENST00000339394 HNRNPCP07910 306 aaKnown RBP eCLIP16.8■□□□□ 0.28
SDC3-202ENST00000339394 OXLD1Q5BKU9 147 aa16.8■□□□□ 0.28
SDC3-202ENST00000339394 C9orf66Q5T8R8 295 aa16.8■□□□□ 0.28
SDC3-202ENST00000339394 Q6ZRG5 221 aa16.8■□□□□ 0.28
SDC3-202ENST00000339394 RHPN1-AS1Q9BWJ2 59 aa16.8■□□□□ 0.28
SDC3-202ENST00000339394 SLC39A9Q9NUM3 307 aa16.8■□□□□ 0.28
SDC3-202ENST00000339394 DOK5Q9P104 306 aa16.8■□□□□ 0.28
SDC3-202ENST00000339394 BORCS7-ASMTA0A0B4J1R7 106 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms