RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 HIST1H2BKO60814 126 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 DFFBO76075 338 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 IFNA5P01569 189 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 AMY1AP04745 511 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 HIST1H2BJP06899 126 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 HIST1H2BOP23527 126 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 HIST1H2BBP33778 126 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 HIST1H2BDP58876 126 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 UBE2G2P60604 165 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 HIST1H2BCP62807 126 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 BLCAPP62952 87 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 HIST2H2BEQ16778 126 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 KHDC3LQ587J8 217 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.92□□□□□ -1.14
HMGB3-201ENST00000325307 TMEM170AQ8WVE7 144 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 HIST1H2BHQ93079 126 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 HIST1H2BNQ99877 126 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 HIST1H2BMQ99879 126 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 C2orf83Q53S99 150 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 UNQ5815/PRO19632Q6UWF5 114 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 SSX7Q7RTT5 188 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 FAM213BQ8TBF2 198 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 RSG1Q9BU20 258 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 VSIRQ9H7M9 311 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 CDC42EP3Q9UKI2 254 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 FBXO7Q9Y3I1 522 aa7.92□□□□□ -1.14
HMGB3-201ENST00000325307 UBE2L5PA0A1B0GUS4 154 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 LINC01548A6NM66 108 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 INS-IGF2F8WCM5 200 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 TCF21O43680 179 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 SLC35E3Q7Z769 313 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 SRSF8Q9BRL6 282 aaKnown RBP7.91□□□□□ -1.14
HMGB3-201ENST00000325307 ACTR3CQ9C0K3 210 aaPredicted RBP7.91□□□□□ -1.14
HMGB3-201ENST00000325307 TMEM160Q9NX00 188 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 LINC00527Q9UJ94 153 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 A0A1B0GV50 99 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 TSPAN15O95858 294 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 OPRK1P41145 380 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 ATP5IP56385 69 aaPredicted RBP7.91□□□□□ -1.14
HMGB3-201ENST00000325307 LEMD1Q68G75 181 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 SCGB1C1Q8TD33 95 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 WNT10AQ9GZT5 417 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 ZNF355PQ9NSJ1 428 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 PRH1P02810 166 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 OR10D4PQ8NGN7 298 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 TMEM147Q9BVK8 224 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 NAGKQ9UJ70 344 aa7.91□□□□□ -1.14
HMGB3-201ENST00000325307 INAFM1C9JVW0 142 aa7.9□□□□□ -1.14
HMGB3-201ENST00000325307 RPLP1P05386 114 aaKnown RBP7.9□□□□□ -1.14
HMGB3-201ENST00000325307 JOSD1Q15040 202 aaPredicted RBP7.9□□□□□ -1.14
HMGB3-201ENST00000325307 ELOBQ15370 118 aa7.9□□□□□ -1.14
HMGB3-201ENST00000325307 ZNF726P1Q15940 193 aa7.9□□□□□ -1.14
HMGB3-201ENST00000325307 GUK1Q16774 197 aa7.9□□□□□ -1.14
HMGB3-201ENST00000325307 OR1P1Q8NH06 330 aa7.9□□□□□ -1.14
HMGB3-201ENST00000325307 SGMS2Q8NHU3 365 aa7.9□□□□□ -1.14
HMGB3-201ENST00000325307 RARRES2Q99969 163 aa7.9□□□□□ -1.14
HMGB3-201ENST00000325307 F11RQ9Y624 299 aaKnown RBP7.9□□□□□ -1.14
HMGB3-201ENST00000325307 HIVEP1P15822 2718 aa7.9□□□□□ -1.14
HMGB3-201ENST00000325307 IGHV3-21A0A0B4J1V1 117 aa7.9□□□□□ -1.14
HMGB3-201ENST00000325307 G3V318 75 aa7.9□□□□□ -1.14
HMGB3-201ENST00000325307 IGHV3-48P01763 117 aa7.9□□□□□ -1.14
HMGB3-201ENST00000325307 ATP6V1FQ16864 119 aa7.9□□□□□ -1.14
HMGB3-201ENST00000325307 BSXQ3C1V8 233 aa7.9□□□□□ -1.14
HMGB3-201ENST00000325307 MRPL52Q86TS9 123 aaKnown RBP7.9□□□□□ -1.14
HMGB3-201ENST00000325307 M0R143 59 aa7.9□□□□□ -1.15
HMGB3-201ENST00000325307 EGR2P11161 476 aaPredicted RBP7.9□□□□□ -1.15
HMGB3-201ENST00000325307 OR2D3Q8NGH3 330 aa7.9□□□□□ -1.15
HMGB3-201ENST00000325307 NPFFR1Q9GZQ6 430 aa7.9□□□□□ -1.15
HMGB3-201ENST00000325307 SMPXQ9UHP9 88 aa7.9□□□□□ -1.15
HMGB3-201ENST00000325307 CYB5BO43169 146 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 MLANAQ16655 118 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 ASPHD1Q5U4P2 390 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 Q6ZS46 218 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 ZNF418Q8TF45 676 aaPredicted RBP7.89□□□□□ -1.15
HMGB3-201ENST00000325307 GNPNAT1Q96EK6 184 aaPredicted RBP7.89□□□□□ -1.15
HMGB3-201ENST00000325307 SLC35B3Q9H1N7 401 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 DNAJC9-AS1A6NH13 148 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 UMAD1C9J7I0 102 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 MFAP2P55001 183 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 SELENOTP62341 195 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 DLK1P80370 383 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 ZNF114Q8NC26 417 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 ACY3Q96HD9 319 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 SLC35E1Q96K37 410 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 ZFHX3Q15911 3703 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 TRAV41A0A0B4J266 112 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 CYSRT1A8MQ03 144 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 NPIPB5A8MRT5 1133 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 OR2C1O95371 312 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 IGHG2P01859 326 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 FGF7P21781 194 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 TTC9CQ8N5M4 171 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 PRSS22Q9GZN4 317 aa7.89□□□□□ -1.15
HMGB3-201ENST00000325307 WDR61Q9GZS3 305 aaKnown RBP7.89□□□□□ -1.15
HMGB3-201ENST00000325307 CORTO00230 105 aa7.88□□□□□ -1.15
HMGB3-201ENST00000325307 OR1L6Q8NGR2 347 aa7.88□□□□□ -1.15
HMGB3-201ENST00000325307 Q8WTZ3 238 aa7.88□□□□□ -1.15
HMGB3-201ENST00000325307 F8P00451 2351 aa7.88□□□□□ -1.15
HMGB3-201ENST00000325307 CBY3A6NI87 242 aa7.88□□□□□ -1.15
HMGB3-201ENST00000325307 PRSS46E5RG02 174 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms