RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 H3BRM9 83 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 SAA1P0DJI8 122 aaPredicted RBP9.53□□□□□ -0.88
VPS39-201ENST00000318006 EEF1AKMT3Q96AZ1 226 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 ASCL2Q99929 193 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 KLF2Q9Y5W3 355 aaPredicted RBP9.53□□□□□ -0.88
VPS39-201ENST00000318006 IGKV1-12A0A0C4DH73 117 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 IGKV1D-12P01611 117 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 BSPH1Q075Z2 132 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 NABP1Q96AH0 204 aa9.53□□□□□ -0.88
VPS39-201ENST00000318006 CHTOPQ9Y3Y2 248 aaKnown RBP9.53□□□□□ -0.88
VPS39-201ENST00000318006 PRCDQ00LT1 54 aa9.52□□□□□ -0.88
VPS39-201ENST00000318006 ATP5G2Q06055 141 aa9.52□□□□□ -0.88
VPS39-201ENST00000318006 DMRTC2Q8IXT2 367 aaPredicted RBP9.52□□□□□ -0.88
VPS39-201ENST00000318006 RPRMLQ8N4K4 120 aa9.52□□□□□ -0.88
VPS39-201ENST00000318006 SPRR3Q9UBC9 169 aa9.52□□□□□ -0.88
VPS39-201ENST00000318006 A0A1B0GWJ7 208 aa9.52□□□□□ -0.89
VPS39-201ENST00000318006 CEACAM4O75871 244 aa9.52□□□□□ -0.89
VPS39-201ENST00000318006 SPINK8P0C7L1 97 aa9.52□□□□□ -0.89
VPS39-201ENST00000318006 BMPERQ8N8U9 685 aa9.52□□□□□ -0.89
VPS39-201ENST00000318006 DLX4Q92988 240 aaPredicted RBP9.52□□□□□ -0.89
VPS39-201ENST00000318006 JMJD8Q96S16 334 aa9.52□□□□□ -0.89
VPS39-201ENST00000318006 MRPL20Q9BYC9 149 aaKnown RBP9.52□□□□□ -0.89
VPS39-201ENST00000318006 DUTP33316 252 aaKnown RBP9.52□□□□□ -0.89
VPS39-201ENST00000318006 QRFPP83859 136 aa9.52□□□□□ -0.89
VPS39-201ENST00000318006 DMRTA2Q96SC8 542 aa9.52□□□□□ -0.89
VPS39-201ENST00000318006 NPFFO15130 113 aa9.52□□□□□ -0.89
VPS39-201ENST00000318006 CDKN1AP38936 164 aa9.52□□□□□ -0.89
VPS39-201ENST00000318006 TMEM249Q2WGJ8 235 aa9.52□□□□□ -0.89
VPS39-201ENST00000318006 ADAMTSL5Q6ZMM2 481 aa9.52□□□□□ -0.89
VPS39-201ENST00000318006 GTSCR1Q86UQ5 136 aa9.52□□□□□ -0.89
VPS39-201ENST00000318006 FBXL15Q9H469 300 aa9.52□□□□□ -0.89
VPS39-201ENST00000318006 FAM106AQ4KMX7 169 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 SPATA31B1PQ5VZV4 182 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 C21orf62Q9NYP8 219 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 ERG28Q9UKR5 140 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 SAA2-SAA4A0A096LPE2 208 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 IGKV1-5P01602 117 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 SAA2P0DJI9 122 aaPredicted RBP9.51□□□□□ -0.89
VPS39-201ENST00000318006 IGLC2P0DOY2 106 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 IGLC3P0DOY3 106 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 NUP35Q8NFH5 326 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 PI4KAP42356 2102 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 IGHV3OR16-13A0A075B7E8 117 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 IGHV3-74A0A0B4J1X5 117 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 COX6B1P14854 86 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 PRTN3P24158 256 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 SSBP2P81877 361 aaPredicted RBP9.51□□□□□ -0.89
VPS39-201ENST00000318006 PSG3Q16557 428 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 MORN2Q502X0 79 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 KLF17Q5JT82 389 aaPredicted RBP9.51□□□□□ -0.89
VPS39-201ENST00000318006 SPAG8Q99932 426 aaPredicted RBP9.51□□□□□ -0.89
VPS39-201ENST00000318006 FBXL7Q9UJT9 491 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 TNFRSF18Q9Y5U5 241 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 SPTBN1Q01082 2364 aaKnown RBP9.51□□□□□ -0.89
VPS39-201ENST00000318006 C17orf100A8MU93 164 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 FOXG1P55316 489 aaPredicted RBP9.51□□□□□ -0.89
VPS39-201ENST00000318006 TMEM190Q8WZ59 177 aa9.51□□□□□ -0.89
VPS39-201ENST00000318006 SEPSECSQ9HD40 501 aaKnown RBP9.51□□□□□ -0.89
VPS39-201ENST00000318006 ROS1P08922 2347 aa9.5□□□□□ -0.89
VPS39-201ENST00000318006 FRMPD3Q5JV73 1810 aa9.5□□□□□ -0.89
VPS39-201ENST00000318006 MYLKQ15746 1914 aa9.5□□□□□ -0.89
VPS39-201ENST00000318006 TRAV2A0A0B4J234 112 aa9.5□□□□□ -0.89
VPS39-201ENST00000318006 PSMB11A5LHX3 300 aa9.5□□□□□ -0.89
VPS39-201ENST00000318006 SPANXA1Q9NS26 97 aa9.5□□□□□ -0.89
VPS39-201ENST00000318006 PLNP26678 52 aa9.5□□□□□ -0.89
VPS39-201ENST00000318006 YAE1D1Q9NRH1 226 aa9.5□□□□□ -0.89
VPS39-201ENST00000318006 Q0VFX4 171 aa9.5□□□□□ -0.89
VPS39-201ENST00000318006 PVRIGQ6DKI7 326 aa9.5□□□□□ -0.89
VPS39-201ENST00000318006 MGST2Q99735 147 aa9.5□□□□□ -0.89
VPS39-201ENST00000318006 PIMREGQ9BSJ6 248 aa9.5□□□□□ -0.89
VPS39-201ENST00000318006 AKAP6Q13023 2319 aa9.5□□□□□ -0.89
VPS39-201ENST00000318006 CACNA1GO43497 2377 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 TRAV8-1A0A0A6YYK1 113 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 TRBV7-9A0A0J9YWB2 115 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 CFPP27918 469 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 LINC00312Q9Y6C7 94 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 TRAV12-3A0A0B4J271 114 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 FAM231BA6NCW3 169 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 D6R8Y8 96 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 F2Z2F3 143 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 ATP5J2P56134 94 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 SRSF6Q13247 344 aaKnown RBP9.49□□□□□ -0.89
VPS39-201ENST00000318006 ATXN8Q156A1 80 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 RAX2Q96IS3 184 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 S4R3C0 116 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 SMAD7O15105 426 aaKnown RBP9.49□□□□□ -0.89
VPS39-201ENST00000318006 LILRA1O75019 489 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 EVI2AP22794 236 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 RNF182Q8N6D2 247 aa9.49□□□□□ -0.89
VPS39-201ENST00000318006 LINC01549A6NIU2 74 aa9.48□□□□□ -0.89
VPS39-201ENST00000318006 RRN3P1Q2M238 152 aa9.48□□□□□ -0.89
VPS39-201ENST00000318006 INTS1Q8N201 2190 aaKnown RBP9.48□□□□□ -0.89
VPS39-201ENST00000318006 A0A1B0GUS0 222 aa9.48□□□□□ -0.89
VPS39-201ENST00000318006 FOXH1O75593 365 aa9.48□□□□□ -0.89
VPS39-201ENST00000318006 FAM71F2Q6NXP2 309 aa9.48□□□□□ -0.89
VPS39-201ENST00000318006 RNF125Q96EQ8 232 aa9.48□□□□□ -0.89
VPS39-201ENST00000318006 ANAPC1Q9H1A4 1944 aa9.48□□□□□ -0.89
VPS39-201ENST00000318006 CACNA1HO95180 2353 aa9.48□□□□□ -0.89
VPS39-201ENST00000318006 IFI27P40305 119 aaPredicted RBP9.48□□□□□ -0.89
VPS39-201ENST00000318006 PDLIM4P50479 330 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms