RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 TMEM116Q8NCL8 245 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 NUDT10Q8NFP7 164 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 WIPF2Q8TF74 440 aaPredicted RBP13.17□□□□□ -0.3
HOXD3-201ENST00000249440 NUDT11Q96G61 164 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 C20orf144Q9BQM9 153 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 FAM103A1Q9BTL3 118 aaKnown RBP13.17□□□□□ -0.3
HOXD3-201ENST00000249440 SNHG12Q9BXW3 62 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 RALYQ9UKM9 306 aaKnown RBP13.17□□□□□ -0.3
HOXD3-201ENST00000249440 EPDR1Q9UM22 224 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 HIST1H1EP10412 219 aaKnown RBP13.16□□□□□ -0.3
HOXD3-201ENST00000249440 SMIM12Q96EX1 92 aa13.16□□□□□ -0.3
HOXD3-201ENST00000249440 MALRD1Q5VYJ5 2156 aa13.16□□□□□ -0.3
HOXD3-201ENST00000249440 IGHV2-26A0A0B4J1V2 119 aa13.16□□□□□ -0.3
HOXD3-201ENST00000249440 B9A039 149 aa13.16□□□□□ -0.3
HOXD3-201ENST00000249440 AMTP48728 403 aa13.16□□□□□ -0.3
HOXD3-201ENST00000249440 CASP6P55212 293 aa13.16□□□□□ -0.3
HOXD3-201ENST00000249440 VAMP8Q9BV40 100 aa13.16□□□□□ -0.3
HOXD3-201ENST00000249440 TBL2Q9Y4P3 447 aaKnown RBP13.16□□□□□ -0.3
HOXD3-201ENST00000249440 INSIG2Q9Y5U4 225 aa13.16□□□□□ -0.3
HOXD3-201ENST00000249440 A0A1W2PS18 150 aa13.15□□□□□ -0.3
HOXD3-201ENST00000249440 IGLV1-47P01700 117 aa13.15□□□□□ -0.3
HOXD3-201ENST00000249440 SLC25A5P05141 298 aaKnown RBP13.15□□□□□ -0.3
HOXD3-201ENST00000249440 MFAP2P55001 183 aa13.15□□□□□ -0.3
HOXD3-201ENST00000249440 NUTF2P61970 127 aaKnown RBP13.15□□□□□ -0.3
HOXD3-201ENST00000249440 TDRG1Q3Y452 100 aa13.15□□□□□ -0.3
HOXD3-201ENST00000249440 BLNKQ8WV28 456 aa13.15□□□□□ -0.3
HOXD3-201ENST00000249440 TMEM68Q96MH6 324 aa13.15□□□□□ -0.3
HOXD3-201ENST00000249440 RCHY1Q96PM5 261 aa13.15□□□□□ -0.3
HOXD3-201ENST00000249440 SIGLEC9Q9Y336 463 aa13.15□□□□□ -0.3
HOXD3-201ENST00000249440 PGPA6NDG6 321 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 HYPMO75409 117 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 CRYGBP07316 175 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 NBEAP1P0C6P0 100 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 COMPP49747 757 aaPredicted RBP13.14□□□□□ -0.31
HOXD3-201ENST00000249440 GNG5P63218 68 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 RUSC1-AS1Q66K80 236 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 PRR27Q6MZM9 219 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 NUP35Q8NFH5 326 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 NRN1Q9NPD7 142 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 FBXL7Q9UJT9 491 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 CD3EP07766 207 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 RAB4AP20338 218 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 KRTDAPP60985 99 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 RBPJQ06330 500 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 SLAQ13239 276 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 ZNF705AQ6ZN79 300 aaPredicted RBP13.14□□□□□ -0.31
HOXD3-201ENST00000249440 TSKUQ8WUA8 353 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 KLF12Q9Y4X4 402 aa13.14□□□□□ -0.31
HOXD3-201ENST00000249440 IGHV1-3A0A0C4DH29 117 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 BUB1B-PAK6H3BSN5 160 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 ZNF324O75467 553 aaPredicted RBP13.13□□□□□ -0.31
HOXD3-201ENST00000249440 CNTFRP26992 372 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 ASPHD1Q5U4P2 390 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 PPP1R27Q86WC6 154 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 MIEN1Q9BRT3 115 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 CLEC7AQ9BXN2 247 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 PAM16Q9Y3D7 125 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 K7ENP7 123 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 FAM87AP0C7U9 286 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 APELAP0DMC3 54 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 PMCHP20382 165 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 PAX2Q02962 417 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 C8orf46Q8TAG6 207 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 GPR82Q96P67 336 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 C7orf69Q9H7B7 122 aa13.13□□□□□ -0.31
HOXD3-201ENST00000249440 DIRC3C9JPN6 131 aa13.12□□□□□ -0.31
HOXD3-201ENST00000249440 PLP1P60201 277 aa13.12□□□□□ -0.31
HOXD3-201ENST00000249440 ATG101Q9BSB4 218 aa13.12□□□□□ -0.31
HOXD3-201ENST00000249440 MRPL27Q9P0M9 148 aaKnown RBP13.12□□□□□ -0.31
HOXD3-201ENST00000249440 F11RQ9Y624 299 aaKnown RBP13.12□□□□□ -0.31
HOXD3-201ENST00000249440 SPTA1P02549 2419 aa13.12□□□□□ -0.31
HOXD3-201ENST00000249440 USP24Q9UPU5 2620 aa13.12□□□□□ -0.31
HOXD3-201ENST00000249440 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.12□□□□□ -0.31
HOXD3-201ENST00000249440 HIGD1CA8MV81 97 aa13.12□□□□□ -0.31
HOXD3-201ENST00000249440 FOSL1P15407 271 aa13.12□□□□□ -0.31
HOXD3-201ENST00000249440 PRR30Q53SZ7 412 aaPredicted RBP13.12□□□□□ -0.31
HOXD3-201ENST00000249440 MRPL52Q86TS9 123 aaKnown RBP13.12□□□□□ -0.31
HOXD3-201ENST00000249440 NEU1Q99519 415 aa13.12□□□□□ -0.31
HOXD3-201ENST00000249440 IGHV3-21A0A0B4J1V1 117 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 M0QZK8 103 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 CA7P43166 264 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 C19orf35Q6ZS72 473 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 ATP5L2Q7Z4Y8 100 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 C5orf17Q8NAS9 161 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 OR4B1Q8NGF8 309 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 C18orf32Q8TCD1 76 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 RNF114Q9Y508 228 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 NBASA2RRP1 2371 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 GP9P14770 177 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 DLX1P56177 255 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 ZNF841Q6ZN19 808 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 RPEQ96AT9 228 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 FMC1Q96HJ9 113 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 VKORC1Q9BQB6 163 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 MLST8Q9BVC4 326 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 RPH3ALQ9UNE2 315 aa13.11□□□□□ -0.31
HOXD3-201ENST00000249440 TCAPO15273 167 aa13.1□□□□□ -0.31
HOXD3-201ENST00000249440 RBP4P02753 201 aa13.1□□□□□ -0.31
HOXD3-201ENST00000249440 LHFPL4Q7Z7J7 247 aa13.1□□□□□ -0.31
HOXD3-201ENST00000249440 SGK494Q96LW2 274 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms