RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 C6orf62Q9GZU0 229 aaPredicted RBP11.85□□□□□ -0.51
CLN3-264ENST00000637985 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.85□□□□□ -0.51
CLN3-264ENST00000637985 TRAV10A0A0B4J240 114 aa11.84□□□□□ -0.51
CLN3-264ENST00000637985 ANKRD20A5PA0PJZ0 165 aa11.84□□□□□ -0.51
CLN3-264ENST00000637985 CRYM-AS1A6NIL9 109 aa11.84□□□□□ -0.51
CLN3-264ENST00000637985 C16orf90A8MZG2 172 aa11.84□□□□□ -0.51
CLN3-264ENST00000637985 TMEM50AO95807 157 aa11.84□□□□□ -0.51
CLN3-264ENST00000637985 BSXQ3C1V8 233 aa11.84□□□□□ -0.51
CLN3-264ENST00000637985 TOMM20LQ6UXN7 152 aa11.84□□□□□ -0.51
CLN3-264ENST00000637985 ZNF600Q6ZNG1 722 aa11.84□□□□□ -0.51
CLN3-264ENST00000637985 Q6ZR54 194 aa11.84□□□□□ -0.51
CLN3-264ENST00000637985 Q6ZRM9 215 aa11.84□□□□□ -0.51
CLN3-264ENST00000637985 APRG1Q8IVJ8 170 aa11.84□□□□□ -0.51
CLN3-264ENST00000637985 SELENOHQ8IZQ5 122 aaKnown RBP11.84□□□□□ -0.51
CLN3-264ENST00000637985 SCGB3A2Q96PL1 93 aa11.84□□□□□ -0.51
CLN3-264ENST00000637985 SLIRPQ9GZT3 109 aaKnown RBP11.84□□□□□ -0.51
CLN3-264ENST00000637985 DNAH5Q8TE73 4624 aa11.83□□□□□ -0.52
CLN3-264ENST00000637985 H3BMQ9 156 aa11.83□□□□□ -0.52
CLN3-264ENST00000637985 SCGB2A1O75556 95 aa11.83□□□□□ -0.52
CLN3-264ENST00000637985 HLA-DMBP28068 263 aa11.83□□□□□ -0.52
CLN3-264ENST00000637985 PAFAH1B2P68402 229 aa11.83□□□□□ -0.52
CLN3-264ENST00000637985 FAM90A2PQ658T7 463 aa11.83□□□□□ -0.52
CLN3-264ENST00000637985 Q6ZTC4 211 aa11.83□□□□□ -0.52
CLN3-264ENST00000637985 OR51S1Q8NGJ8 323 aa11.83□□□□□ -0.52
CLN3-264ENST00000637985 LHFPL5Q8TAF8 219 aa11.83□□□□□ -0.52
CLN3-264ENST00000637985 SCRT2Q9NQ03 307 aa11.83□□□□□ -0.52
CLN3-264ENST00000637985 CACFD1Q9UGQ2 172 aa11.83□□□□□ -0.52
CLN3-264ENST00000637985 SCP2D1Q9UJQ7 156 aa11.83□□□□□ -0.52
CLN3-264ENST00000637985 PUS1Q9Y606 427 aaKnown RBP eCLIP11.83□□□□□ -0.52
CLN3-264ENST00000637985 TMEM56-RWDD3S4R434 201 aa11.83□□□□□ -0.52
CLN3-264ENST00000637985 IGHV3-49A0A0A0MS15 119 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 CLN5O75503 358 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 OPRK1P41145 380 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 HTR2BP41595 481 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 ZNF124Q15973 351 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 TMEM268Q5VZI3 342 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 Q8NAQ8 132 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 OR4X1Q8NH49 305 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 IL22RA2Q969J5 263 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 GPR146Q96CH1 333 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 SOSTQ9BQB4 213 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 VSIRQ9H7M9 311 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 ZFAND3Q9H8U3 227 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 KCNIP3Q9Y2W7 256 aa11.82□□□□□ -0.52
CLN3-264ENST00000637985 FABP12A6NFH5 140 aa11.81□□□□□ -0.52
CLN3-264ENST00000637985 AMBPP02760 352 aa11.81□□□□□ -0.52
CLN3-264ENST00000637985 TNFSF8P32971 234 aa11.81□□□□□ -0.52
CLN3-264ENST00000637985 SOHLH1Q5JUK2 328 aa11.81□□□□□ -0.52
CLN3-264ENST00000637985 FNDC4Q9H6D8 234 aaPredicted RBP11.81□□□□□ -0.52
CLN3-264ENST00000637985 TMEM231Q9H6L2 316 aa11.81□□□□□ -0.52
CLN3-264ENST00000637985 HEYLQ9NQ87 328 aaPredicted RBP11.81□□□□□ -0.52
CLN3-264ENST00000637985 CACNG5Q9UF02 275 aa11.81□□□□□ -0.52
CLN3-264ENST00000637985 TRAV30A0A087WSZ9 112 aa11.8□□□□□ -0.52
CLN3-264ENST00000637985 RPS10-NUDT3A0A1W2PQS6 291 aa11.8□□□□□ -0.52
CLN3-264ENST00000637985 RBMY1A1P0DJD3 496 aaKnown RBP11.8□□□□□ -0.52
CLN3-264ENST00000637985 RBMY1CP0DJD4 496 aa11.8□□□□□ -0.52
CLN3-264ENST00000637985 TMEM187Q14656 261 aa11.8□□□□□ -0.52
CLN3-264ENST00000637985 RBMY1FQ15415 496 aaKnown RBP11.8□□□□□ -0.52
CLN3-264ENST00000637985 C2orf83Q53S99 150 aa11.8□□□□□ -0.52
CLN3-264ENST00000637985 TCF24Q7RTU0 167 aa11.8□□□□□ -0.52
CLN3-264ENST00000637985 MCFD2Q8NI22 146 aa11.8□□□□□ -0.52
CLN3-264ENST00000637985 ST8SIA2Q92186 375 aa11.8□□□□□ -0.52
CLN3-264ENST00000637985 IGKV3-7A0A075B6H7 116 aa11.79□□□□□ -0.52
CLN3-264ENST00000637985 IGHV3OR16-13A0A075B7E8 117 aa11.79□□□□□ -0.52
CLN3-264ENST00000637985 IGHV3-74A0A0B4J1X5 117 aa11.79□□□□□ -0.52
CLN3-264ENST00000637985 TRAV2A0A0B4J234 112 aa11.79□□□□□ -0.52
CLN3-264ENST00000637985 A0A1B0GU03 582 aa11.79□□□□□ -0.52
CLN3-264ENST00000637985 A0A1W2PS18 150 aa11.79□□□□□ -0.52
CLN3-264ENST00000637985 NPPCP23582 126 aa11.79□□□□□ -0.52
CLN3-264ENST00000637985 TFPI2P48307 235 aa11.79□□□□□ -0.52
CLN3-264ENST00000637985 MLANAQ16655 118 aa11.79□□□□□ -0.52
CLN3-264ENST00000637985 RNASEH2CQ8TDP1 164 aaKnown RBP11.79□□□□□ -0.52
CLN3-264ENST00000637985 TMEM230Q96A57 120 aa11.79□□□□□ -0.52
CLN3-264ENST00000637985 MCUBQ9NWR8 336 aa11.79□□□□□ -0.52
CLN3-264ENST00000637985 MRPL36Q9P0J6 103 aaKnown RBP11.79□□□□□ -0.52
CLN3-264ENST00000637985 CEBPZOSA8MTT3 80 aa11.78□□□□□ -0.52
CLN3-264ENST00000637985 CA1P00915 261 aaPredicted RBP11.78□□□□□ -0.52
CLN3-264ENST00000637985 APOHP02749 345 aaPredicted RBP11.78□□□□□ -0.52
CLN3-264ENST00000637985 SULT1A3P0DMM9 295 aa11.78□□□□□ -0.52
CLN3-264ENST00000637985 SULT1A4P0DMN0 295 aa11.78□□□□□ -0.52
CLN3-264ENST00000637985 NOXA1Q86UR1 476 aa11.78□□□□□ -0.52
CLN3-264ENST00000637985 GBGT1Q8N5D6 347 aa11.78□□□□□ -0.52
CLN3-264ENST00000637985 METTL26Q96S19 204 aa11.78□□□□□ -0.52
CLN3-264ENST00000637985 IGLV2-18A0A075B6J9 118 aa11.77□□□□□ -0.53
CLN3-264ENST00000637985 A0A0B4J2A0 478 aa11.77□□□□□ -0.53
CLN3-264ENST00000637985 PIGBOS1A0A0B4J2F0 54 aa11.77□□□□□ -0.53
CLN3-264ENST00000637985 DNASE2O00115 360 aaPredicted RBP11.77□□□□□ -0.53
CLN3-264ENST00000637985 DFFBO76075 338 aa11.77□□□□□ -0.53
CLN3-264ENST00000637985 IGKV1-17P01599 117 aa11.77□□□□□ -0.53
CLN3-264ENST00000637985 SLC25A4P12235 298 aa11.77□□□□□ -0.53
CLN3-264ENST00000637985 ANXA3P12429 323 aa11.77□□□□□ -0.53
CLN3-264ENST00000637985 CRYBB3P26998 211 aa11.77□□□□□ -0.53
CLN3-264ENST00000637985 FAUP35544 74 aaKnown RBP11.77□□□□□ -0.53
CLN3-264ENST00000637985 NMSQ5H8A3 153 aa11.77□□□□□ -0.53
CLN3-264ENST00000637985 LILRB2Q8N423 598 aa11.77□□□□□ -0.53
CLN3-264ENST00000637985 SLC24A4Q8NFF2 622 aa11.77□□□□□ -0.53
CLN3-264ENST00000637985 OR1S2Q8NGQ3 325 aa11.77□□□□□ -0.53
CLN3-264ENST00000637985 NARS2Q96I59 477 aaKnown RBP11.77□□□□□ -0.53
CLN3-264ENST00000637985 MS4A6AQ9H2W1 248 aa11.77□□□□□ -0.53
CLN3-264ENST00000637985 SHPKQ9UHJ6 478 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms