RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 IGLC1P0CG04 106 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 STAG3L2P0CL84 134 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 STAG3L3P0CL85 134 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 BCL2P10415 239 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 GUK1Q16774 197 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 DEFB112Q30KQ8 113 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 KHDC3LQ587J8 217 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 ZNF506Q5JVG8 444 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 FAM209BQ5JX69 171 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 UNQ5815/PRO19632Q6UWF5 114 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 RBMS3Q6XE24 437 aaKnown RBP8.32□□□□□ -1.08
CLN3-248ENST00000636355 Q6YL49 198 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 TMEM219Q86XT9 240 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 FAM223AQ8IWN6 122 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 NECAP1Q8NC96 275 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 MAPK1IP1LQ8NDC0 245 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 BPIFCQ8NFQ6 507 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 SUN5Q8TC36 379 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 NPIPB3Q92617 1050 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 FAM103A1Q9BTL3 118 aaKnown RBP8.32□□□□□ -1.08
CLN3-248ENST00000636355 TNFRSF19Q9NS68 423 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 RNF24Q9Y225 148 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 CARHSP1Q9Y2V2 147 aaKnown RBP8.32□□□□□ -1.08
CLN3-248ENST00000636355 RFNGQ9Y644 331 aa8.32□□□□□ -1.08
CLN3-248ENST00000636355 TLN2Q9Y4G6 2542 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 TRAV41A0A0B4J266 112 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 TMEM218A2RU14 115 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 PSMB11A5LHX3 300 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 MFAP4P55083 255 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 YPEL3P61236 119 aaPredicted RBP8.31□□□□□ -1.08
CLN3-248ENST00000636355 C10orf91Q5T1B1 145 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 FAM122CQ6P4D5 195 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 PQLC2Q6ZP29 291 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 SLC35E3Q7Z769 313 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 OR2T6Q8NHC8 308 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 TMUB1Q9BVT8 246 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 SCRT1Q9BWW7 348 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 SEC11CQ9BY50 192 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 FUT9Q9Y231 359 aa8.31□□□□□ -1.08
CLN3-248ENST00000636355 LOC102723971A0A1B0GUV8 181 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 TMEM89A2RUT3 159 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 RBFOX3A6NFN3 312 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 COX7A2P2O60397 106 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 APELAP0DMC3 54 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 S100A7P31151 101 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 KRTAP1-1Q07627 177 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 ECSCRQ19T08 205 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 LCN15Q6UWW0 184 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 SSX7Q7RTT5 188 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 STXBP6Q8NFX7 210 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 NARS2Q96I59 477 aaKnown RBP8.3□□□□□ -1.08
CLN3-248ENST00000636355 EIF5A2Q9GZV4 153 aaKnown RBP8.3□□□□□ -1.08
CLN3-248ENST00000636355 TREM1Q9NP99 234 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 TMEM167BQ9NRX6 74 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 C21orf62Q9NYP8 219 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 TECRQ9NZ01 308 aaKnown RBP8.3□□□□□ -1.08
CLN3-248ENST00000636355 VAX2Q9UIW0 290 aa8.3□□□□□ -1.08
CLN3-248ENST00000636355 NOTCH2Q04721 2471 aa8.29□□□□□ -1.08
CLN3-248ENST00000636355 TRBV7-1A0A0A6YYK4 115 aa8.29□□□□□ -1.08
CLN3-248ENST00000636355 GNG7O60262 68 aa8.29□□□□□ -1.08
CLN3-248ENST00000636355 OR2C1O95371 312 aa8.29□□□□□ -1.08
CLN3-248ENST00000636355 TOMM40O96008 361 aa8.29□□□□□ -1.08
CLN3-248ENST00000636355 IGKV1-17P01599 117 aa8.29□□□□□ -1.08
CLN3-248ENST00000636355 IGHV4-59P01825 116 aa8.29□□□□□ -1.08
CLN3-248ENST00000636355 RPL15P61313 204 aaKnown RBP8.29□□□□□ -1.08
CLN3-248ENST00000636355 SPNS3Q6ZMD2 512 aa8.29□□□□□ -1.08
CLN3-248ENST00000636355 CCDC28AQ8IWP9 274 aa8.29□□□□□ -1.08
CLN3-248ENST00000636355 NPFFR1Q9GZQ6 430 aa8.29□□□□□ -1.08
CLN3-248ENST00000636355 SLC35B3Q9H1N7 401 aa8.29□□□□□ -1.08
CLN3-248ENST00000636355 DNAJC4Q9NNZ3 241 aa8.29□□□□□ -1.08
CLN3-248ENST00000636355 MRPL36Q9P0J6 103 aaKnown RBP8.29□□□□□ -1.08
CLN3-248ENST00000636355 TMEM250H0YL14 139 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 SFTA3P0C7M3 94 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 ARL14EPLP0DKL9 152 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 C8orf88P0DMB2 117 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 RHOGP84095 191 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 MEF2BQ02080 365 aaPredicted RBP8.28□□□□□ -1.08
CLN3-248ENST00000636355 LY6EQ16553 131 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 MLANAQ16655 118 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 GCSAMLQ5JQS6 135 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 FAM78BQ5VT40 261 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 C10orf113Q5VZT2 155 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 C19orf35Q6ZS72 473 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 SVBPQ8N300 66 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 CIARTQ8N365 385 aaPredicted RBP8.28□□□□□ -1.08
CLN3-248ENST00000636355 OR51G1Q8NGK1 321 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 ZNF502Q8TBZ5 544 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 EEF1AKMT3Q96AZ1 226 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 USMG5Q96IX5 58 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 LINC00052Q96N35 136 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 TCEAL7Q9BRU2 100 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 SEPSECSQ9HD40 501 aaKnown RBP8.28□□□□□ -1.08
CLN3-248ENST00000636355 GNG13Q9P2W3 67 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 FBXL7Q9UJT9 491 aa8.28□□□□□ -1.08
CLN3-248ENST00000636355 VPS13CQ709C8 3753 aa8.27□□□□□ -1.08
CLN3-248ENST00000636355 MDFIC2A0A1B0GVS7 189 aa8.27□□□□□ -1.09
CLN3-248ENST00000636355 CLDN34H7C241 214 aa8.27□□□□□ -1.09
CLN3-248ENST00000636355 PDE6DO43924 150 aa8.27□□□□□ -1.09
CLN3-248ENST00000636355 HYPMO75409 117 aa8.27□□□□□ -1.09
CLN3-248ENST00000636355 GCHFRP30047 84 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms