RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 LSM4Q9Y4Z0 139 aaKnown RBP11.41□□□□□ -0.58
LIMS3-206ENST00000631420 ATRQ13535 2644 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.41□□□□□ -0.58
LIMS3-206ENST00000631420 A0A1W2PRX2 142 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 PPP5D1E7EU14 171 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 GNG7O60262 68 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 IFNA5P01569 189 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 CTSGP08311 255 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 IGLC1P0CG04 106 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 FGF7P21781 194 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 FCGR2BP31994 310 aaPredicted RBP11.41□□□□□ -0.58
LIMS3-206ENST00000631420 ADMP35318 185 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 CDX1P47902 265 aaPredicted RBP11.41□□□□□ -0.58
LIMS3-206ENST00000631420 ZNF90Q03938 601 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 TIGITQ495A1 244 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 BTNL8Q6UX41 500 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 TMEM182Q6ZP80 229 aaPredicted RBP11.41□□□□□ -0.58
LIMS3-206ENST00000631420 THAP8Q8NA92 274 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 MGST2Q99735 147 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 TXN2Q99757 166 aa11.41□□□□□ -0.58
LIMS3-206ENST00000631420 ZNF471Q9BX82 626 aaPredicted RBP11.41□□□□□ -0.58
LIMS3-206ENST00000631420 ZFP92A6NM28 416 aa11.4□□□□□ -0.58
LIMS3-206ENST00000631420 I3L521 148 aa11.4□□□□□ -0.58
LIMS3-206ENST00000631420 IGKV1-17P01599 117 aa11.4□□□□□ -0.58
LIMS3-206ENST00000631420 GATA2P23769 480 aaPredicted RBP11.4□□□□□ -0.58
LIMS3-206ENST00000631420 OR10J1P30954 320 aa11.4□□□□□ -0.58
LIMS3-206ENST00000631420 RUNX1Q01196 453 aa11.4□□□□□ -0.58
LIMS3-206ENST00000631420 TEPPQ6URK8 271 aa11.4□□□□□ -0.58
LIMS3-206ENST00000631420 IGHV3-35A0A0C4DH35 117 aa11.39□□□□□ -0.59
LIMS3-206ENST00000631420 AGPAT2O15120 278 aa11.39□□□□□ -0.59
LIMS3-206ENST00000631420 TGOLN2O43493 480 aa11.39□□□□□ -0.59
LIMS3-206ENST00000631420 LGALS1P09382 135 aaKnown RBP11.39□□□□□ -0.59
LIMS3-206ENST00000631420 ZNF266Q14584 549 aa11.39□□□□□ -0.59
LIMS3-206ENST00000631420 HSD17B11Q8NBQ5 300 aa11.39□□□□□ -0.59
LIMS3-206ENST00000631420 KLHL30-AS1Q8NEE0 82 aa11.39□□□□□ -0.59
LIMS3-206ENST00000631420 SCGB1C1Q8TD33 95 aa11.39□□□□□ -0.59
LIMS3-206ENST00000631420 ZNF414Q96IQ9 312 aa11.39□□□□□ -0.59
LIMS3-206ENST00000631420 PEF1Q9UBV8 284 aaKnown RBP11.39□□□□□ -0.59
LIMS3-206ENST00000631420 TSSC4Q9Y5U2 329 aaPredicted RBP11.39□□□□□ -0.59
LIMS3-206ENST00000631420 BORCS7-ASMTA0A0B4J1R7 106 aa11.38□□□□□ -0.59
LIMS3-206ENST00000631420 ADARB2-AS1A8MUL3 147 aa11.38□□□□□ -0.59
LIMS3-206ENST00000631420 JTBO76095 146 aa11.38□□□□□ -0.59
LIMS3-206ENST00000631420 DEFB136Q30KP8 78 aa11.38□□□□□ -0.59
LIMS3-206ENST00000631420 TMEM158Q8WZ71 300 aa11.38□□□□□ -0.59
LIMS3-206ENST00000631420 RSG1Q9BU20 258 aa11.38□□□□□ -0.59
LIMS3-206ENST00000631420 TRAV30A0A087WSZ9 112 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 BMPR1BO00238 502 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 OR2C1O95371 312 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 ATP6V0CP27449 155 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 ARL3P36405 182 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 CAMLGP49069 296 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 CYP2G1PQ6ZSU1 146 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 C8orf86Q6ZUL3 223 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 C4orf3Q8WVX3 66 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 DUX3Q96PT4 197 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 TRGV9Q99603 122 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 GGTLC1Q9BX51 225 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 NPCDR1Q9BY65 106 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 PARD6GQ9BYG4 376 aaPredicted RBP11.37□□□□□ -0.59
LIMS3-206ENST00000631420 SH3BGRL3Q9H299 93 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 ARV1Q9H2C2 271 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 SLC45A2Q9UMX9 530 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 IGHV4OR15-8A0A075B7B6 117 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 A0A087WW49 117 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 NUDT19A8MXV4 375 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 NUPL2O15504 423 aaKnown RBP11.37□□□□□ -0.59
LIMS3-206ENST00000631420 NSUN5P1Q3KNT7 163 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 MIC13Q5XKP0 118 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 SLC51BQ86UW2 128 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 ATP6V0BQ99437 205 aa11.37□□□□□ -0.59
LIMS3-206ENST00000631420 GAR1Q9NY12 217 aaKnown RBP11.37□□□□□ -0.59
LIMS3-206ENST00000631420 MPDU1O75352 247 aa11.36□□□□□ -0.59
LIMS3-206ENST00000631420 HSPB1P04792 205 aaKnown RBP11.36□□□□□ -0.59
LIMS3-206ENST00000631420 LINC00869P0C866 280 aa11.36□□□□□ -0.59
LIMS3-206ENST00000631420 PSG1P11464 419 aa11.36□□□□□ -0.59
LIMS3-206ENST00000631420 BPIFCQ8NFQ6 507 aa11.36□□□□□ -0.59
LIMS3-206ENST00000631420 OR11H1Q8NG94 326 aa11.36□□□□□ -0.59
LIMS3-206ENST00000631420 CITED1Q99966 193 aa11.36□□□□□ -0.59
LIMS3-206ENST00000631420 GINS3Q9BRX5 216 aa11.36□□□□□ -0.59
LIMS3-206ENST00000631420 GGCTO75223 188 aaKnown RBP11.35□□□□□ -0.59
LIMS3-206ENST00000631420 RD3LP0DJH9 198 aa11.35□□□□□ -0.59
LIMS3-206ENST00000631420 C4BPBP20851 252 aa11.35□□□□□ -0.59
LIMS3-206ENST00000631420 YPEL3P61236 119 aaPredicted RBP11.35□□□□□ -0.59
LIMS3-206ENST00000631420 RAB31Q13636 194 aa11.35□□□□□ -0.59
LIMS3-206ENST00000631420 SPSB3Q6PJ21 355 aa11.35□□□□□ -0.59
LIMS3-206ENST00000631420 BAP18Q8IXM2 172 aa11.35□□□□□ -0.59
LIMS3-206ENST00000631420 OR1N2Q8NGR9 330 aa11.35□□□□□ -0.59
LIMS3-206ENST00000631420 STOML3Q8TAV4 291 aa11.35□□□□□ -0.59
LIMS3-206ENST00000631420 ST8SIA2Q92186 375 aa11.35□□□□□ -0.59
LIMS3-206ENST00000631420 SLC25A32Q9H2D1 315 aa11.35□□□□□ -0.59
LIMS3-206ENST00000631420 PLA2G2EQ9NZK7 142 aa11.35□□□□□ -0.59
LIMS3-206ENST00000631420 IGHV3OR16-8A0A075B7F1 116 aa11.34□□□□□ -0.59
LIMS3-206ENST00000631420 TOMM40O96008 361 aa11.34□□□□□ -0.59
LIMS3-206ENST00000631420 CFDP00746 253 aaPredicted RBP11.34□□□□□ -0.59
LIMS3-206ENST00000631420 TPT1P13693 172 aaKnown RBP11.34□□□□□ -0.59
LIMS3-206ENST00000631420 RPL29P47914 159 aaKnown RBP11.34□□□□□ -0.59
LIMS3-206ENST00000631420 PRR20EP86478 221 aa11.34□□□□□ -0.59
LIMS3-206ENST00000631420 PRR20CP86479 221 aa11.34□□□□□ -0.59
LIMS3-206ENST00000631420 PRR20DP86480 221 aa11.34□□□□□ -0.59
LIMS3-206ENST00000631420 PRR20BP86481 221 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms