RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 Q8WTZ3 238 aa5.55□□□□□ -1.52
CUX1-219ENST00000606749 SMIM4Q8WVI0 70 aa5.55□□□□□ -1.52
CUX1-219ENST00000606749 GRAMD2BQ96HH9 432 aa5.55□□□□□ -1.52
CUX1-219ENST00000606749 NARS2Q96I59 477 aaKnown RBP5.55□□□□□ -1.52
CUX1-219ENST00000606749 MFFQ9GZY8 342 aa5.55□□□□□ -1.52
CUX1-219ENST00000606749 HEYLQ9NQ87 328 aaPredicted RBP5.55□□□□□ -1.52
CUX1-219ENST00000606749 CACNG5Q9UF02 275 aa5.55□□□□□ -1.52
CUX1-219ENST00000606749 FBXL17Q9UF56 701 aa5.55□□□□□ -1.52
CUX1-219ENST00000606749 TMEM56-RWDD3S4R434 201 aa5.55□□□□□ -1.52
CUX1-219ENST00000606749 KNCNA6PVL3 124 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 CEBPZOSA8MTT3 80 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 DEDDO75618 318 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 NXPH3O95157 252 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 HNRNPCP07910 306 aaKnown RBP eCLIP5.54□□□□□ -1.527e-8■□□□□ 10.3
CUX1-219ENST00000606749 ZNF688P0C7X2 276 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 IGLC1P0CG04 106 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 RBMY1A1P0DJD3 496 aaKnown RBP5.54□□□□□ -1.52
CUX1-219ENST00000606749 RBMY1CP0DJD4 496 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 SLC25A4P12235 298 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 OR10J1P30954 320 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 RND2P52198 227 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 IL18Q14116 193 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 RBMY1FQ15415 496 aaKnown RBP5.54□□□□□ -1.52
CUX1-219ENST00000606749 NMSQ5H8A3 153 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 MORN3Q6PF18 240 aaPredicted RBP5.54□□□□□ -1.52
CUX1-219ENST00000606749 C16orf54Q6UWD8 224 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 Q8NAQ8 132 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 SLC24A4Q8NFF2 622 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 OR51S1Q8NGJ8 323 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 OR1S2Q8NGQ3 325 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 C2CD4CQ8TF44 421 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 TMEM170AQ8WVE7 144 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 GLMPQ8WWB7 406 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 NPIPB3Q92617 1050 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 DIRAS2Q96HU8 199 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 RAB40CQ96S21 281 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 PRRT1Q99946 306 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 MRPS26Q9BYN8 205 aaKnown RBP5.54□□□□□ -1.52
CUX1-219ENST00000606749 RABL2AQ9UBK7 228 aaPredicted RBP5.54□□□□□ -1.52
CUX1-219ENST00000606749 CACFD1Q9UGQ2 172 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 RABL2BQ9UNT1 228 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 ALMS1Q8TCU4 4167 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 AGRNO00468 2067 aa5.54□□□□□ -1.52
CUX1-219ENST00000606749 KMT2AQ03164 3969 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 BIRC6Q9NR09 4857 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 ANKRD20A5PA0PJZ0 165 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 HELTA6NFD8 242 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 GSTZ1O43708 216 aaPredicted RBP5.53□□□□□ -1.52
CUX1-219ENST00000606749 RD3LP0DJH9 198 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 SULT1A3P0DMM9 295 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 SULT1A4P0DMN0 295 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 SPP1P10451 314 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 EIF2B2P49770 351 aaKnown RBP5.53□□□□□ -1.52
CUX1-219ENST00000606749 AP2S1P53680 142 aaPredicted RBP5.53□□□□□ -1.52
CUX1-219ENST00000606749 DHRS2Q13268 280 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 TMEM41BQ5BJD5 291 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 ACTL10Q5JWF8 245 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 ETFRF1Q6IPR1 90 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 NOXA1Q86UR1 476 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 CLVS1Q8IUQ0 354 aaPredicted RBP5.53□□□□□ -1.52
CUX1-219ENST00000606749 CSNK1G2-AS1Q8NCQ2 148 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 DYNC2LI1Q8TCX1 351 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 IL22RA2Q969J5 263 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 SCGB3A2Q96PL1 93 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 SOSTQ9BQB4 213 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 HRH4Q9H3N8 390 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 PRR13Q9NZ81 148 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 KCNIP3Q9Y2W7 256 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 U3KQ87 197 aa5.53□□□□□ -1.52
CUX1-219ENST00000606749 ELOA3CA0A087WX78 387 aaPredicted RBP5.52□□□□□ -1.53
CUX1-219ENST00000606749 IGHV4-28A0A0C4DH34 117 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 ZNF705EA8MWA4 302 aaPredicted RBP5.52□□□□□ -1.53
CUX1-219ENST00000606749 IGLL5B9A064 214 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 C11orf94C9JXX5 98 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 BUB3O43684 328 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 TOMM40O96008 361 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 IFNA10P01566 189 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 IL4P05112 153 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 MIFP14174 115 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 C4BPBP20851 252 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 NPY1RP25929 384 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 TNFSF8P32971 234 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 CCR6P51684 374 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 TMBIM6P55061 237 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 TCTAP57738 103 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 PRR20EP86478 221 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 PRR20CP86479 221 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 PRR20DP86480 221 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 PRR20BP86481 221 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 PRR20AP86496 221 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 PLECQ15149 4684 aaKnown RBP5.52□□□□□ -1.53
CUX1-219ENST00000606749 USF2Q15853 346 aaPredicted RBP5.52□□□□□ -1.53
CUX1-219ENST00000606749 PSMG4Q5JS54 123 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 LYZL2Q7Z4W2 148 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 RAB2BQ8WUD1 216 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 ACY3Q96HD9 319 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 SEPSECSQ9HD40 501 aaKnown RBP5.52□□□□□ -1.53
CUX1-219ENST00000606749 CLEC5AQ9NY25 188 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 CCDC59Q9P031 241 aaKnown RBP5.52□□□□□ -1.53
CUX1-219ENST00000606749 HSPB7Q9UBY9 170 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms