RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 CITED4Q96RK1 184 aa10.59□□□□□ -0.71
LIG1-218ENST00000599322 RNF2Q99496 336 aa10.59□□□□□ -0.71
LIG1-218ENST00000599322 PAIP2BQ9ULR5 123 aaKnown RBP10.59□□□□□ -0.71
LIG1-218ENST00000599322 RYR2Q92736 4967 aa10.59□□□□□ -0.71
LIG1-218ENST00000599322 DNAH7Q8WXX0 4024 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 IGKV3-7A0A075B6H7 116 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 NDUFB6O95139 128 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 HOXB5P09067 269 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 LYL1P12980 280 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 OR10J1P30954 320 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 TFPI2P48307 235 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 PPP1R1AQ13522 171 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 BAK1Q16611 211 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 IL17DQ8TAD2 202 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 MUC7Q8TAX7 377 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 ACY3Q96HD9 319 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 SLC35E1Q96K37 410 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 FAM110AQ9BQ89 295 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 WFDC10AQ9H1F0 79 aa10.58□□□□□ -0.72
LIG1-218ENST00000599322 FNDC4Q9H6D8 234 aaPredicted RBP10.58□□□□□ -0.72
LIG1-218ENST00000599322 IGHV3OR16-13A0A075B7E8 117 aa10.57□□□□□ -0.72
LIG1-218ENST00000599322 IGHV3-74A0A0B4J1X5 117 aa10.57□□□□□ -0.72
LIG1-218ENST00000599322 RBMY1BA6NDE4 496 aaKnown RBP10.57□□□□□ -0.72
LIG1-218ENST00000599322 RBMY1EA6NEQ0 496 aaKnown RBP10.57□□□□□ -0.72
LIG1-218ENST00000599322 WRBO00258 174 aa10.57□□□□□ -0.72
LIG1-218ENST00000599322 RBMY1DP0C7P1 496 aaKnown RBP10.57□□□□□ -0.72
LIG1-218ENST00000599322 GPX4P36969 197 aaPredicted RBP10.57□□□□□ -0.72
LIG1-218ENST00000599322 YPEL3P61236 119 aaPredicted RBP10.57□□□□□ -0.72
LIG1-218ENST00000599322 MLANAQ16655 118 aa10.57□□□□□ -0.72
LIG1-218ENST00000599322 TIGITQ495A1 244 aa10.57□□□□□ -0.72
LIG1-218ENST00000599322 C4orf46Q504U0 113 aa10.57□□□□□ -0.72
LIG1-218ENST00000599322 PRSS54Q6PEW0 395 aa10.57□□□□□ -0.72
LIG1-218ENST00000599322 LINC00322Q6ZN03 302 aaPredicted RBP10.57□□□□□ -0.72
LIG1-218ENST00000599322 UBQLN2Q9UHD9 624 aa10.57□□□□□ -0.72
LIG1-218ENST00000599322 STAB2Q8WWQ8 2551 aa10.56□□□□□ -0.72
LIG1-218ENST00000599322 UBE2CO00762 179 aa10.56□□□□□ -0.72
LIG1-218ENST00000599322 RD3LP0DJH9 198 aa10.56□□□□□ -0.72
LIG1-218ENST00000599322 IL7P13232 177 aa10.56□□□□□ -0.72
LIG1-218ENST00000599322 AP2S1P53680 142 aaPredicted RBP10.56□□□□□ -0.72
LIG1-218ENST00000599322 WFDC3Q8IUB2 231 aa10.56□□□□□ -0.72
LIG1-218ENST00000599322 GBGT1Q8N5D6 347 aa10.56□□□□□ -0.72
LIG1-218ENST00000599322 STPG3Q8N7X2 389 aa10.56□□□□□ -0.72
LIG1-218ENST00000599322 ST8SIA2Q92186 375 aa10.56□□□□□ -0.72
LIG1-218ENST00000599322 NPIPB3Q92617 1050 aa10.56□□□□□ -0.72
LIG1-218ENST00000599322 IGHV3-66A0A0C4DH42 116 aa10.55□□□□□ -0.72
LIG1-218ENST00000599322 C9orf170A2RU37 121 aa10.55□□□□□ -0.72
LIG1-218ENST00000599322 HELTA6NFD8 242 aa10.55□□□□□ -0.72
LIG1-218ENST00000599322 ZFP92A6NM28 416 aa10.55□□□□□ -0.72
LIG1-218ENST00000599322 HNRNPCP07910 306 aaKnown RBP eCLIP10.55□□□□□ -0.72
LIG1-218ENST00000599322 OR4E1P0C645 316 aa10.55□□□□□ -0.72
LIG1-218ENST00000599322 IGLC1P0CG04 106 aa10.55□□□□□ -0.72
LIG1-218ENST00000599322 NUP62P37198 522 aaPredicted RBP10.55□□□□□ -0.72
LIG1-218ENST00000599322 VSIRQ9H7M9 311 aa10.55□□□□□ -0.72
LIG1-218ENST00000599322 ZFAND3Q9H8U3 227 aa10.55□□□□□ -0.72
LIG1-218ENST00000599322 RABAC1Q9UI14 185 aa10.55□□□□□ -0.72
LIG1-218ENST00000599322 TRAV2A0A0B4J234 112 aa10.54□□□□□ -0.72
LIG1-218ENST00000599322 SYNGR2O43760 224 aa10.54□□□□□ -0.72
LIG1-218ENST00000599322 DFFBO76075 338 aa10.54□□□□□ -0.72
LIG1-218ENST00000599322 IL4P05112 153 aa10.54□□□□□ -0.72
LIG1-218ENST00000599322 IAPPP10997 89 aa10.54□□□□□ -0.72
LIG1-218ENST00000599322 S100A7P31151 101 aa10.54□□□□□ -0.72
LIG1-218ENST00000599322 GGNBP1Q5YKI7 109 aa10.54□□□□□ -0.72
LIG1-218ENST00000599322 LINC00299Q6ZSB3 139 aa10.54□□□□□ -0.72
LIG1-218ENST00000599322 LYG2Q86SG7 212 aa10.54□□□□□ -0.72
LIG1-218ENST00000599322 S100ZQ8WXG8 99 aa10.54□□□□□ -0.72
LIG1-218ENST00000599322 MRPL36Q9P0J6 103 aaKnown RBP10.54□□□□□ -0.72
LIG1-218ENST00000599322 KIR2DL5BA0A0G2JN68 375 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 KIR2DL5BA0A0G2JPC4 375 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 PITX3O75364 302 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 TOMM40O96008 361 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 IGKV1-17P01599 117 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 CRYBB3P26998 211 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 P2RY1P47900 373 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 DHRS2Q13268 280 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 FAM90A2PQ658T7 463 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 KIR2DL5AQ8N109 375 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 STXBP6Q8NFX7 210 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 OR51G1Q8NGK1 321 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 KIR2DL5BQ8NHK3 375 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 CCDC32Q9BV29 185 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 MS4A6AQ9H2W1 248 aa10.53□□□□□ -0.72
LIG1-218ENST00000599322 STRAPQ9Y3F4 350 aaKnown RBP10.53□□□□□ -0.72
LIG1-218ENST00000599322 LYRM1O43325 122 aa10.52□□□□□ -0.73
LIG1-218ENST00000599322 APOHP02749 345 aaPredicted RBP10.52□□□□□ -0.73
LIG1-218ENST00000599322 RPL35AP18077 110 aaKnown RBP10.52□□□□□ -0.73
LIG1-218ENST00000599322 NKX2-1P43699 371 aaPredicted RBP10.52□□□□□ -0.73
LIG1-218ENST00000599322 ZNF846Q147U1 533 aa10.52□□□□□ -0.73
LIG1-218ENST00000599322 ODF3L2Q3SX64 289 aa10.52□□□□□ -0.73
LIG1-218ENST00000599322 SPANXN5Q5MJ07 72 aa10.52□□□□□ -0.73
LIG1-218ENST00000599322 MZT2BQ6NZ67 158 aa10.52□□□□□ -0.73
LIG1-218ENST00000599322 Q6ZWC4 215 aa10.52□□□□□ -0.73
LIG1-218ENST00000599322 PPP1R14BQ96C90 147 aa10.52□□□□□ -0.73
LIG1-218ENST00000599322 MAGT1Q9H0U3 335 aa10.52□□□□□ -0.73
LIG1-218ENST00000599322 RETNQ9HD89 108 aa10.52□□□□□ -0.73
LIG1-218ENST00000599322 FLVCR2Q9UPI3 526 aa10.52□□□□□ -0.73
LIG1-218ENST00000599322 SNRPGP15A8MWD9 76 aa10.51□□□□□ -0.73
LIG1-218ENST00000599322 CFDP00746 253 aaPredicted RBP10.51□□□□□ -0.73
LIG1-218ENST00000599322 ANXA7P20073 488 aaKnown RBP10.51□□□□□ -0.73
LIG1-218ENST00000599322 APRG1Q8IVJ8 170 aa10.51□□□□□ -0.73
LIG1-218ENST00000599322 TMEM170AQ8WVE7 144 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms