RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TMEM190Q8WZ59 177 aa9.35□□□□□ -0.91
UPF1-203ENST00000594504 MLXQ9UH92 298 aa9.35□□□□□ -0.91
UPF1-203ENST00000594504 UFC1Q9Y3C8 167 aa9.35□□□□□ -0.91
UPF1-203ENST00000594504 TMEM213A2RRL7 107 aa9.34□□□□□ -0.91
UPF1-203ENST00000594504 SCGB2A1O75556 95 aa9.34□□□□□ -0.91
UPF1-203ENST00000594504 SCAF4O95104 1147 aaKnown RBP9.34□□□□□ -0.91
UPF1-203ENST00000594504 IAPPP10997 89 aa9.34□□□□□ -0.91
UPF1-203ENST00000594504 SLC25A4P12235 298 aa9.34□□□□□ -0.91
UPF1-203ENST00000594504 NKX2-1P43699 371 aaPredicted RBP9.34□□□□□ -0.91
UPF1-203ENST00000594504 ELLP55199 621 aaPredicted RBP9.34□□□□□ -0.91
UPF1-203ENST00000594504 ID3Q02535 119 aa9.34□□□□□ -0.91
UPF1-203ENST00000594504 IAH1Q2TAA2 248 aaPredicted RBP9.34□□□□□ -0.91
UPF1-203ENST00000594504 TM4SF20Q53R12 229 aa9.34□□□□□ -0.91
UPF1-203ENST00000594504 UNQ9165/PRO28630Q6UXU0 137 aa9.34□□□□□ -0.91
UPF1-203ENST00000594504 TMEM61Q8N0U2 210 aa9.34□□□□□ -0.91
UPF1-203ENST00000594504 C12orf45Q8N5I9 185 aaPredicted RBP9.34□□□□□ -0.91
UPF1-203ENST00000594504 UXS1Q8NBZ7 420 aa9.34□□□□□ -0.91
UPF1-203ENST00000594504 OR4X1Q8NH49 305 aa9.34□□□□□ -0.91
UPF1-203ENST00000594504 MARC2Q969Z3 335 aa9.34□□□□□ -0.91
UPF1-203ENST00000594504 MAGT1Q9H0U3 335 aa9.34□□□□□ -0.91
UPF1-203ENST00000594504 GPN1Q9HCN4 374 aaPredicted RBP9.34□□□□□ -0.91
UPF1-203ENST00000594504 TECRQ9NZ01 308 aaKnown RBP9.34□□□□□ -0.91
UPF1-203ENST00000594504 CSMD3Q7Z407 3707 aa9.34□□□□□ -0.91
UPF1-203ENST00000594504 BIRC6Q9NR09 4857 aa9.33□□□□□ -0.92
UPF1-203ENST00000594504 PRAF2O60831 178 aa9.33□□□□□ -0.92
UPF1-203ENST00000594504 CLN5O75503 358 aa9.33□□□□□ -0.92
UPF1-203ENST00000594504 TMEM50AO95807 157 aa9.33□□□□□ -0.92
UPF1-203ENST00000594504 IFNA4P05014 189 aa9.33□□□□□ -0.92
UPF1-203ENST00000594504 RAB11AP62491 216 aa9.33□□□□□ -0.92
UPF1-203ENST00000594504 RPP30P78346 268 aaKnown RBP9.33□□□□□ -0.92
UPF1-203ENST00000594504 MLANAQ16655 118 aa9.33□□□□□ -0.92
UPF1-203ENST00000594504 ZBTB8BQ8NAP8 495 aaPredicted RBP9.33□□□□□ -0.92
UPF1-203ENST00000594504 TMEM116Q8NCL8 245 aa9.33□□□□□ -0.92
UPF1-203ENST00000594504 OR10C1Q96KK4 312 aa9.33□□□□□ -0.92
UPF1-203ENST00000594504 MARVELD1Q9BSK0 173 aa9.33□□□□□ -0.92
UPF1-203ENST00000594504 DAZ1Q9NQZ3 744 aaKnown RBP9.33□□□□□ -0.92
UPF1-203ENST00000594504 STAB2Q8WWQ8 2551 aa9.33□□□□□ -0.92
UPF1-203ENST00000594504 DNAH1Q9P2D7 4330 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 TRAV30A0A087WSZ9 112 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 C15orf62A8K5M9 175 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 INMT-MINDY4F8WBC2 141 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 WRBO00258 174 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 CCSO14618 274 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 JTBO76095 146 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 RND2P52198 227 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 PRSS54Q6PEW0 395 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 BTNL8Q6UX41 500 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 SLC16A13Q7RTY0 426 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 IL17DQ8TAD2 202 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 C20orf24Q9BUV8 137 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 MRPL36Q9P0J6 103 aaKnown RBP9.32□□□□□ -0.92
UPF1-203ENST00000594504 MRPL27Q9P0M9 148 aaKnown RBP9.32□□□□□ -0.92
UPF1-203ENST00000594504 GSKIPQ9P0R6 139 aa9.32□□□□□ -0.92
UPF1-203ENST00000594504 C5orf51A6NDU8 294 aa9.31□□□□□ -0.92
UPF1-203ENST00000594504 SNRPGP15A8MWD9 76 aa9.31□□□□□ -0.92
UPF1-203ENST00000594504 FAM25EA8MYX2 175 aa9.31□□□□□ -0.92
UPF1-203ENST00000594504 K7EMT4 169 aa9.31□□□□□ -0.92
UPF1-203ENST00000594504 YIF1AO95070 293 aa9.31□□□□□ -0.92
UPF1-203ENST00000594504 SCGB1D2O95969 90 aa9.31□□□□□ -0.92
UPF1-203ENST00000594504 C8orf88P0DMB2 117 aa9.31□□□□□ -0.92
UPF1-203ENST00000594504 POLR2GP62487 172 aaKnown RBP eCLIP9.31□□□□□ -0.92
UPF1-203ENST00000594504 ZNF600Q6ZNG1 722 aa9.31□□□□□ -0.92
UPF1-203ENST00000594504 ZNF414Q96IQ9 312 aa9.31□□□□□ -0.92
UPF1-203ENST00000594504 OVOL2Q9BRP0 275 aa9.31□□□□□ -0.92
UPF1-203ENST00000594504 SSSCA1O60232 199 aa9.3□□□□□ -0.92
UPF1-203ENST00000594504 PTTG1O95997 202 aa9.3□□□□□ -0.92
UPF1-203ENST00000594504 IGKV1-17P01599 117 aa9.3□□□□□ -0.92
UPF1-203ENST00000594504 IGLC1P0CG04 106 aa9.3□□□□□ -0.92
UPF1-203ENST00000594504 GPX4P36969 197 aaPredicted RBP9.3□□□□□ -0.92
UPF1-203ENST00000594504 SPANXN5Q5MJ07 72 aa9.3□□□□□ -0.92
UPF1-203ENST00000594504 GSG1LQ6UXU4 331 aa9.3□□□□□ -0.92
UPF1-203ENST00000594504 OR1S2Q8NGQ3 325 aa9.3□□□□□ -0.92
UPF1-203ENST00000594504 NPIPB3Q92617 1050 aa9.3□□□□□ -0.92
UPF1-203ENST00000594504 ACY3Q96HD9 319 aa9.3□□□□□ -0.92
UPF1-203ENST00000594504 RAB40CQ96S21 281 aa9.3□□□□□ -0.92
UPF1-203ENST00000594504 GINS3Q9BRX5 216 aa9.3□□□□□ -0.92
UPF1-203ENST00000594504 UBQLN2Q9UHD9 624 aa9.3□□□□□ -0.92
UPF1-203ENST00000594504 PAIP2BQ9ULR5 123 aaKnown RBP9.3□□□□□ -0.92
UPF1-203ENST00000594504 STRAPQ9Y3F4 350 aaKnown RBP9.3□□□□□ -0.92
UPF1-203ENST00000594504 PUS1Q9Y606 427 aaKnown RBP eCLIP9.3□□□□□ -0.92
UPF1-203ENST00000594504 IGHV3OR16-8A0A075B7F1 116 aa9.29□□□□□ -0.92
UPF1-203ENST00000594504 LOC102724200A0A096LPH7 203 aaPredicted RBP9.29□□□□□ -0.92
UPF1-203ENST00000594504 H3BP45 60 aa9.29□□□□□ -0.92
UPF1-203ENST00000594504 MBPP02686 304 aaPredicted RBP9.29□□□□□ -0.92
UPF1-203ENST00000594504 OR10J1P30954 320 aa9.29□□□□□ -0.92
UPF1-203ENST00000594504 TAS2R30P59541 319 aa9.29□□□□□ -0.92
UPF1-203ENST00000594504 EWSR1Q01844 656 aaKnown RBP eCLIP9.29□□□□□ -0.92
UPF1-203ENST00000594504 TIGITQ495A1 244 aa9.29□□□□□ -0.92
UPF1-203ENST00000594504 TOMM20LQ6UXN7 152 aa9.29□□□□□ -0.92
UPF1-203ENST00000594504 SLC35E1Q96K37 410 aa9.29□□□□□ -0.92
UPF1-203ENST00000594504 SMIM8Q96KF7 97 aa9.29□□□□□ -0.92
UPF1-203ENST00000594504 C2orf50Q96LR7 162 aa9.29□□□□□ -0.92
UPF1-203ENST00000594504 GGTLC1Q9BX51 225 aa9.29□□□□□ -0.92
UPF1-203ENST00000594504 PSENENQ9NZ42 101 aa9.29□□□□□ -0.92
UPF1-203ENST00000594504 RCL1Q9Y2P8 373 aaKnown RBP9.29□□□□□ -0.92
UPF1-203ENST00000594504 TRAV14DV4A0A0A6YYC5 116 aa9.28□□□□□ -0.92
UPF1-203ENST00000594504 PRSS46E5RG02 174 aa9.28□□□□□ -0.92
UPF1-203ENST00000594504 ZNF207O43670 478 aaKnown RBP9.28□□□□□ -0.92
UPF1-203ENST00000594504 TSC22D2O75157 780 aa9.28□□□□□ -0.92
UPF1-203ENST00000594504 YPEL3P61236 119 aaPredicted RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms