RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 RND2P52198 227 aa11.33□□□□□ -0.6
TRIM28-203ENST00000593582 TIGITQ495A1 244 aa11.33□□□□□ -0.6
TRIM28-203ENST00000593582 GBGT1Q8N5D6 347 aa11.33□□□□□ -0.6
TRIM28-203ENST00000593582 OR1S2Q8NGQ3 325 aa11.33□□□□□ -0.6
TRIM28-203ENST00000593582 IL17DQ8TAD2 202 aa11.33□□□□□ -0.6
TRIM28-203ENST00000593582 TMEM170AQ8WVE7 144 aa11.33□□□□□ -0.6
TRIM28-203ENST00000593582 NARS2Q96I59 477 aaKnown RBP11.33□□□□□ -0.6
TRIM28-203ENST00000593582 SRRQ9GZT4 340 aa11.33□□□□□ -0.6
TRIM28-203ENST00000593582 RBKSQ9H477 322 aa11.33□□□□□ -0.6
TRIM28-203ENST00000593582 KIR2DL5BA0A0G2JN68 375 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 KIR2DL5BA0A0G2JPC4 375 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 DNASE2O00115 360 aaPredicted RBP11.32□□□□□ -0.6
TRIM28-203ENST00000593582 UBE2CO00762 179 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 IGLC1P0CG04 106 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 OR10J1P30954 320 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 ATP5IP56385 69 aaPredicted RBP11.32□□□□□ -0.6
TRIM28-203ENST00000593582 RBMS2Q15434 407 aaKnown RBP11.32□□□□□ -0.6
TRIM28-203ENST00000593582 TRIQKQ629K1 86 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 Q6ZWC4 215 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 APRG1Q8IVJ8 170 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 KIR2DL5AQ8N109 375 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 LILRB2Q8N423 598 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 STPG3Q8N7X2 389 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 KIR2DL5BQ8NHK3 375 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 Q8WTZ3 238 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 OVOL2Q9BRP0 275 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 MS4A6AQ9H2W1 248 aa11.32□□□□□ -0.6
TRIM28-203ENST00000593582 RPL35AP18077 110 aaKnown RBP11.31□□□□□ -0.6
TRIM28-203ENST00000593582 CRYBB3P26998 211 aa11.31□□□□□ -0.6
TRIM28-203ENST00000593582 YPEL3P61236 119 aaPredicted RBP11.31□□□□□ -0.6
TRIM28-203ENST00000593582 WFDC3Q8IUB2 231 aa11.31□□□□□ -0.6
TRIM28-203ENST00000593582 CENPSQ8N2Z9 138 aa11.31□□□□□ -0.6
TRIM28-203ENST00000593582 LRTM2Q8N967 370 aa11.31□□□□□ -0.6
TRIM28-203ENST00000593582 ACY3Q96HD9 319 aa11.31□□□□□ -0.6
TRIM28-203ENST00000593582 TP53TG1Q9Y2A0 90 aa11.31□□□□□ -0.6
TRIM28-203ENST00000593582 STARD9Q9P2P6 4700 aa11.3□□□□□ -0.6
TRIM28-203ENST00000593582 NAP1L6A6NFF2 107 aa11.3□□□□□ -0.6
TRIM28-203ENST00000593582 SFT2D2O95562 160 aa11.3□□□□□ -0.6
TRIM28-203ENST00000593582 IFNA4P05014 189 aa11.3□□□□□ -0.6
TRIM28-203ENST00000593582 SLC25A6P12236 298 aa11.3□□□□□ -0.6
TRIM28-203ENST00000593582 PPP1R1AQ13522 171 aa11.3□□□□□ -0.6
TRIM28-203ENST00000593582 NPIPB3Q92617 1050 aa11.3□□□□□ -0.6
TRIM28-203ENST00000593582 GRAMD2BQ96HH9 432 aa11.3□□□□□ -0.6
TRIM28-203ENST00000593582 MAP6D1Q9H9H5 199 aa11.3□□□□□ -0.6
TRIM28-203ENST00000593582 TMED3Q9Y3Q3 217 aa11.3□□□□□ -0.6
TRIM28-203ENST00000593582 TRAV2A0A0B4J234 112 aa11.29□□□□□ -0.6
TRIM28-203ENST00000593582 SPRY2O43597 315 aa11.29□□□□□ -0.6
TRIM28-203ENST00000593582 PITX3O75364 302 aa11.29□□□□□ -0.6
TRIM28-203ENST00000593582 RD3LP0DJH9 198 aa11.29□□□□□ -0.6
TRIM28-203ENST00000593582 P2RY1P47900 373 aa11.29□□□□□ -0.6
TRIM28-203ENST00000593582 EIF2B2P49770 351 aaKnown RBP11.29□□□□□ -0.6
TRIM28-203ENST00000593582 UBE2MP61081 183 aaKnown RBP11.29□□□□□ -0.6
TRIM28-203ENST00000593582 BAK1Q16611 211 aa11.29□□□□□ -0.6
TRIM28-203ENST00000593582 DEFB135Q30KP9 77 aa11.29□□□□□ -0.6
TRIM28-203ENST00000593582 NDUFA13Q9P0J0 144 aa11.29□□□□□ -0.6
TRIM28-203ENST00000593582 RABAC1Q9UI14 185 aa11.29□□□□□ -0.6
TRIM28-203ENST00000593582 CENPXA8MT69 81 aa11.28□□□□□ -0.6
TRIM28-203ENST00000593582 FAM90A26D6RGX4 464 aa11.28□□□□□ -0.6
TRIM28-203ENST00000593582 IL4P05112 153 aa11.28□□□□□ -0.6
TRIM28-203ENST00000593582 ZNF124Q15973 351 aa11.28□□□□□ -0.6
TRIM28-203ENST00000593582 LINC00854A0A1B0GVQ3 168 aa11.27□□□□□ -0.61
TRIM28-203ENST00000593582 HELTA6NFD8 242 aa11.27□□□□□ -0.61
TRIM28-203ENST00000593582 MED6O75586 246 aa11.27□□□□□ -0.61
TRIM28-203ENST00000593582 NDUFB6O95139 128 aa11.27□□□□□ -0.61
TRIM28-203ENST00000593582 TOMM40O96008 361 aa11.27□□□□□ -0.61
TRIM28-203ENST00000593582 HNRNPCP07910 306 aaKnown RBP eCLIP11.27□□□□□ -0.61
TRIM28-203ENST00000593582 HOXB5P09067 269 aa11.27□□□□□ -0.61
TRIM28-203ENST00000593582 GPX4P36969 197 aaPredicted RBP11.27□□□□□ -0.61
TRIM28-203ENST00000593582 RAB11AP62491 216 aa11.27□□□□□ -0.61
TRIM28-203ENST00000593582 STXBP6Q8NFX7 210 aa11.27□□□□□ -0.61
TRIM28-203ENST00000593582 RNF183Q96D59 192 aa11.27□□□□□ -0.61
TRIM28-203ENST00000593582 CSTL1Q9H114 145 aa11.27□□□□□ -0.61
TRIM28-203ENST00000593582 LYSTQ99698 3801 aa11.26□□□□□ -0.61
TRIM28-203ENST00000593582 MPTX1A8MV57 137 aa11.26□□□□□ -0.61
TRIM28-203ENST00000593582 IAPPP10997 89 aa11.26□□□□□ -0.61
TRIM28-203ENST00000593582 AP2S1P53680 142 aaPredicted RBP11.26□□□□□ -0.61
TRIM28-203ENST00000593582 DEFB131AP59861 70 aa11.26□□□□□ -0.61
TRIM28-203ENST00000593582 RPP30P78346 268 aaKnown RBP11.26□□□□□ -0.61
TRIM28-203ENST00000593582 SLC35E1Q96K37 410 aa11.26□□□□□ -0.61
TRIM28-203ENST00000593582 CIB3Q96Q77 187 aaPredicted RBP11.26□□□□□ -0.61
TRIM28-203ENST00000593582 PAIP2BQ9ULR5 123 aaKnown RBP11.26□□□□□ -0.61
TRIM28-203ENST00000593582 U3KQE9 123 aa11.26□□□□□ -0.61
TRIM28-203ENST00000593582 TENM2Q9NT68 2774 aa11.26□□□□□ -0.61
TRIM28-203ENST00000593582 C9orf170A2RU37 121 aa11.25□□□□□ -0.61
TRIM28-203ENST00000593582 ZFP92A6NM28 416 aa11.25□□□□□ -0.61
TRIM28-203ENST00000593582 PSG1P11464 419 aa11.25□□□□□ -0.61
TRIM28-203ENST00000593582 GAMTQ14353 236 aa11.25□□□□□ -0.61
TRIM28-203ENST00000593582 USF2Q15853 346 aaPredicted RBP11.25□□□□□ -0.61
TRIM28-203ENST00000593582 GGNBP1Q5YKI7 109 aa11.25□□□□□ -0.61
TRIM28-203ENST00000593582 LEMD1Q68G75 181 aa11.25□□□□□ -0.61
TRIM28-203ENST00000593582 C16orf54Q6UWD8 224 aa11.25□□□□□ -0.61
TRIM28-203ENST00000593582 FAM24BQ8N5W8 94 aa11.25□□□□□ -0.61
TRIM28-203ENST00000593582 OR51G1Q8NGK1 321 aa11.25□□□□□ -0.61
TRIM28-203ENST00000593582 SDHCQ99643 169 aaPredicted RBP11.25□□□□□ -0.61
TRIM28-203ENST00000593582 C7orf50Q9BRJ6 194 aaKnown RBP11.25□□□□□ -0.61
TRIM28-203ENST00000593582 DYNC2H1Q8NCM8 4307 aaKnown RBP11.24□□□□□ -0.61
TRIM28-203ENST00000593582 A0A0J9YWU9 116 aa11.24□□□□□ -0.61
TRIM28-203ENST00000593582 LCE6AA0A183 80 aa11.24□□□□□ -0.61
TRIM28-203ENST00000593582 K7EQG2 157 aa11.24□□□□□ -0.61
TRIM28-203ENST00000593582 SYNGR2O43760 224 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms